Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05966 and RBAM_018220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:28
# Commandline: needle
# -asequence dna-align/BSNT_05966___scoA.1.9828.seq
# -bsequence dna-align/RBAM_018220___scoA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05966___scoA-RBAM_018220___scoA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05966___scoA-RBAM_018220___scoA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05966___scoA
# 2: RBAM_018220___scoA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 741
# Identity: 536/741 (72.3%)
# Similarity: 536/741 (72.3%)
# Gaps: 63/741 ( 8.5%)
# Score: 1975.5
#
#
#=======================================
BSNT_05966___ 1 ATGGGAAAAG---------TG--CTGTCATCAAGCAAGGAAGCTGCGAAA 39
|||||||||| || ||.|.||||| ||.|||||...|
RBAM_018220__ 1 ATGGGAAAAGGAAAAGTGATGGACTCTTATCAA-----GATGCTGCTGCA 45
BSNT_05966___ 40 TTGATTCATGATGGGGATACGCTGATCGCGGGAGGGTTTGGGCTGTGCGG 89
.||||..|.||.||.||.||.||.|||||.|||||.||.||.||||||||
RBAM_018220__ 46 CTGATCAAGGACGGAGACACCCTCATCGCAGGAGGCTTCGGCCTGTGCGG 95
BSNT_05966___ 90 CATCCCTGAACAGCTCATT--TTGTCTATAAGAGATCAGGGA-------G 130
|||.||.||||| ||| ||.|| |.||||||||| |
RBAM_018220__ 96 CATTCCGGAACA----ATTAATTCTC-----GCGATCAGGGACAGCGGCG 136
BSNT_05966___ 131 TAAAGGATTTAACCGTTGTCAGCAATAACTGCGGAGTCGATGACTGGGGG 180
||||..|.||.|||||||||||.|||||||||||.||.|||||.||||||
RBAM_018220__ 137 TAAAAAACTTGACCGTTGTCAGTAATAACTGCGGTGTTGATGATTGGGGG 186
BSNT_05966___ 181 CTTGG---TTTGCTTCTGGCTAACAAGCAAATCAAGAAAATGATTGCTTC 227
.|.|| .|||||| ||.|||..|||.|||||.||||||.|.||.||
RBAM_018220__ 187 TTAGGCCTCTTGCTT---GCAAACCGGCAGATCAAAAAAATGGTCGCATC 233
BSNT_05966___ 228 CTATGTCGGTGAAAATAAAATTTTTGAGCGGCAGTTTTTAAGCGGAGAGC 277
||||||.||.|||||.||||..|||||.|||||||||||||||||.||||
RBAM_018220__ 234 CTATGTGGGAGAAAACAAAACCTTTGAACGGCAGTTTTTAAGCGGGGAGC 283
BSNT_05966___ 278 TTGAGGTCGAGCTTGTTCCCCAAGGAACGCTCGCTGAGAGAATTCGTGCA 327
|.||.|||||..|.||.|||||||||||||||||.||.||||||||.||.
RBAM_018220__ 284 TGGAAGTCGAATTGGTGCCCCAAGGAACGCTCGCAGAAAGAATTCGCGCG 333
BSNT_05966___ 328 GGCGGTGCAGGCATACCGGGATTTTATACGGCGACAGGCGTCGGCACCTC 377
||.||.||.|||||.||||..|||||.||..|..|.||||||||.||.||
RBAM_018220__ 334 GGAGGGGCGGGCATTCCGGCGTTTTACACACCTGCGGGCGTCGGAACATC 383
BSNT_05966___ 378 CATAGCCGAGGGAAAAGAACATAAAACATTCGGCGGCCGAACTTATGTGC 427
..||||||||||||||||||||||.|||||.|.|||.||.||.|||.|.|
RBAM_018220__ 384 AGTAGCCGAGGGAAAAGAACATAAGACATTTGACGGACGCACCTATCTTC 433
BSNT_05966___ 428 TGGAGCGAGGCATTACCGGCGATGTGGCGATCGTCAAAGCGTGGAAAGCG 477
|||||..|||.|||||.||..|.|..||.|||||.||.||.||||||||.
RBAM_018220__ 434 TGGAGAAAGGGATTACAGGGAACGCCGCCATCGTAAAGGCCTGGAAAGCC 483
BSNT_05966___ 478 GACACCATGGGCAATTTGGTTTTTCGGAAA-ACGGCGAGAAATTTCAATC 526
||..|..|||||||..| |.|.|||.|||| |||||||||||||||||||
RBAM_018220__ 484 GATCCTCTGGGCAACCT-GATGTTCAGAAAGACGGCGAGAAATTTCAATC 532
BSNT_05966___ 527 CCATTGCCGCCATGGCAGGCAAGATCACGATTGCCGAGGCGGAAGAAATC 576
|..|.||.||.|||||||||||..|.||||||||.|||||.|||||||||
RBAM_018220__ 533 CGCTCGCTGCAATGGCAGGCAAAGTGACGATTGCAGAGGCTGAAGAAATC 582
BSNT_05966___ 577 GTGGAAGCAGGAGAGCTCGATCCAGATCACATCCATACGCCGGGAATTTA 626
||.||.||.||||||||.|||||.|||||.||.|||||||||||.||||.
RBAM_018220__ 583 GTCGATGCCGGAGAGCTTGATCCGGATCAAATTCATACGCCGGGTATTTT 632
BSNT_05966___ 627 CGTACAGCATGTCGTGCTTGGCGCGAGCCAAGAAAAACGGATTGAAAAAC 676
.||.|||||.||..||||.||||.||..||.|||||||||||||||...|
RBAM_018220__ 633 TGTGCAGCACGTGCTGCTCGGCGGGATTCATGAAAAACGGATTGAACGCC 682
BSNT_05966___ 677 GAACAGTTCAGCAAGCATCGGGAAAGGGTGAGGCCAAGTGA 717
|.||.||.|.|||||||| ||
RBAM_018220__ 683 GCACCGTCCGGCAAGCAT---GA------------------ 702
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