Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02947 and RBAM_018040

See DNA alignment / Visit BSNT_02947 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:48
# Commandline: needle
#    -asequence pep-align/BSNT_02947___yndJ.1.9828.seq
#    -bsequence pep-align/RBAM_018040___yndJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02947___yndJ-RBAM_018040___yndJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02947___yndJ-RBAM_018040___yndJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02947___yndJ
# 2: RBAM_018040___yndJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 578
# Identity:     367/578 (63.5%)
# Similarity:   436/578 (75.4%)
# Gaps:          38/578 ( 6.6%)
# Score: 1920.0
# 
#
#=======================================

BSNT_02947___      1 -------------------------------MQRNGIVSALCFIGFLAAE     19
                                                    ::|:.:|..:||:||.|||
RBAM_018040__      1 MLQHKGSCEKSDTRHAFLLPGDFPGNRGRNMLKRHLMVCVICFLGFAAAE     50

BSNT_02947___     20 APDISVAEALVLLSILFFVPGIFPFVFRQSPVRAAQFMEYGLIQCYPAAA     69
                     ||.||.||..||.|:|||||.:|.|.||.|     ..:|..|::.||.||
RBAM_018040__     51 APHISTAETFVLFSVLFFVPAVFDFAFRPS-----NTLENVLLRSYPVAA     95

BSNT_02947___     70 FFAVLALVTEVGVFALIWWMYTVFIALYAILRLWETKIHRIEETSVLFGL    119
                     ..|||||||:...||::|.:||:.:||||:.||.:|.|||.||.||:.|.
RBAM_018040__     96 LCAVLALVTDFSFFAVVWLVYTLGLALYAVRRLMKTNIHRTEEMSVMAGF    145

BSNT_02947___    120 IYLAGGGFWFFAYAAHLQIMQFGPLIILLTAVHFHYSAFLIPIFNGLLGR    169
                     |||||||||||||...:.:|.|||||:|||||||||||||||||||||||
RBAM_018040__    146 IYLAGGGFWFFAYVLEIPVMNFGPLIVLLTAVHFHYSAFLIPIFNGLLGR    195

BSNT_02947___    170 TIRKHRMLYSWITWVILLSPLLIALGITYSKTLDVIAVSIYMAAIYLHAF    219
                     .||:.|:||.|.|.:||:||:|||||||:|||||||||::|:|.:|::|:
RBAM_018040__    196 IIREKRVLYRWSTVIILISPILIALGITFSKTLDVIAVALYLAGLYVNAY    245

BSNT_02947___    220 LVFTAAFRTKTGTFLIRLSSAVLMITIAFSMIYSFGVFRQEVTLTINQMI    269
                     |||||.|.||||..|||.||||||||||||:|||:||:|:|.||||:|||
RBAM_018040__    246 LVFTAPFVTKTGRILIRSSSAVLMITIAFSLIYSYGVYREEATLTISQMI    295

BSNT_02947___    270 WIHGFVNAFGVILPALIGWRIEDAKPFDADSVKTFSRIYGKRKIGEEFLA    319
                     ||||.|||||||||||.|||:|:.:|||..|.:|||||||||.||:|||.
RBAM_018040__    296 WIHGAVNAFGVILPALAGWRLENPRPFDEGSERTFSRIYGKRTIGKEFLT    345

BSNT_02947___    320 NIQAENNARYSGLVDDMGSLRSKDFSPEKLAPLILSFYEQTIEYNIKAKV    369
                     :|.|.|:..|:||:|.|..|.|:|||.|||||.:.||||:||:|:|.|||
RBAM_018040__    346 DIHAANDTHYTGLLDQMRELHSEDFSTEKLAPAVNSFYEETIDYDIMAKV    395

BSNT_02947___    370 TWSMWFRPLAIIYEWFSRRIGQIHLSTNPDWYRMYSKIKGVHSKKDGRER    419
                     |||.||||.|.:||.||||.||||||.|||||.|:|.|.||.|.||||:.
RBAM_018040__    396 TWSRWFRPFARVYEPFSRRAGQIHLSMNPDWYIMHSDIIGVDSDKDGRKN    445

BSNT_02947___    420 VRAWIRTNEKNETIFTALYSVYRSNGEGYMNISLPLPFSSMTGILKPYHH    469
                     ||||||||||.||:||||||.||:.||||||||||||:..||||||||..
RBAM_018040__    446 VRAWIRTNEKQETVFTALYSAYRAKGEGYMNISLPLPYGQMTGILKPYAR    495

BSNT_02947___    470 QEKLVLTSRRRKSRAGDEGIYLQTRAGTCPLPLSETFLIEAAHDNKLTAV    519
                     ::.||||||||||.||||||||||:.|||.|||:|||||.|..:..|.||
RBAM_018040__    496 KQNLVLTSRRRKSGAGDEGIYLQTKWGTCHLPLAETFLISAQSETSLKAV    545

BSNT_02947___    520 HHMWLFGIKFLTVHYSITHINQPIERT-    546
                     |||||||:|||||||.|||.:.. .|: 
RBAM_018040__    546 HHMWLFGLKFLTVHYRITHASAG-NRSK    572


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

Amino acid alignment: BSNT_02947 and RBAM_018040

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
