Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02947 and RBAM_018040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:48
# Commandline: needle
# -asequence dna-align/BSNT_02947___yndJ.1.9828.seq
# -bsequence dna-align/RBAM_018040___yndJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02947___yndJ-RBAM_018040___yndJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02947___yndJ-RBAM_018040___yndJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02947___yndJ
# 2: RBAM_018040___yndJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1792
# Identity: 1162/1792 (64.8%)
# Similarity: 1162/1792 (64.8%)
# Gaps: 224/1792 (12.5%)
# Score: 3779.5
#
#
#=======================================
BSNT_02947___ 0 -------------------------------------------------- 0
RBAM_018040__ 1 TTGCTTCAGCATAAAGGTTCATGTGAAAAATCGGATACTCGGCACGCTTT 50
BSNT_02947___ 1 ----------------------------------------ATGC---AAC 7
|||| |.|
RBAM_018040__ 51 TCTCTTACCGGGGGACTTTCCGGGAAACAGAGGGAGAAACATGCTGAAGC 100
BSNT_02947___ 8 GAAATGGCATAGTCAGTGCGCTTTGTTTTATAGGATTTCTTGCAGCGGAA 57
|..||..|||.||..|.|.|.||||.|||.|.||||||...||.||.|||
RBAM_018040__ 101 GTCATCTCATGGTATGCGTGATTTGCTTTTTGGGATTTGCGGCGGCTGAA 150
BSNT_02947___ 58 GCACCGGATATTTCAGTGGCAGAGGCACTCGTTTTGTTATCCATTCTATT 107
||.|||.||||.|||...||.|||.|..|.|||||.||.|||.|.||.||
RBAM_018040__ 151 GCTCCGCATATATCAACTGCTGAGACGTTTGTTTTATTTTCCGTACTTTT 200
BSNT_02947___ 108 TTTCGTGCCGGGAATTTTCCCTTTTGTTTTT----CGTCAATCGCCGGTT 153
||||||.||.|...|.|||..|||||.|||| ||||||.|.||
RBAM_018040__ 201 TTTCGTTCCCGCTGTATTCGATTTTGCTTTTCGGCCGTCAAACACC---- 246
BSNT_02947___ 154 CGTGCTGCTCAGTTTATGGAATATGGGCTAATCCAGTGCTATCCGGCAGC 203
||| ||..|||.|.||.|.|.|.|.|||||.|..||
RBAM_018040__ 247 -------------TTA--GAGAATGTGTTATTACGGAGTTATCCTGTTGC 281
BSNT_02947___ 204 CGCATTCTTTGCGGTGTTGGCTCTTGTGACAGA----GGTTGGAGTTTTC 249
|||.||.|.|||||||.|.||.|||||.||||| .||| ||||.
RBAM_018040__ 282 CGCTTTATGTGCGGTGCTTGCGCTTGTCACAGACTTCAGTT----TTTTT 327
BSNT_02947___ 250 GCACTTATCTGGTGGATGTACACAGTTTTTA---------TTGCATTGTA 290
||..||.|.||| |.| ||||.|| |.|||.||||
RBAM_018040__ 328 GCCGTTGTATGG--------CTC-GTTTATACGCTTGGGCTGGCACTGTA 368
BSNT_02947___ 291 TGCGATCCTCCGCCTTTGGGAAACAAAGATACATAGAATCGAAGAGACAT 340
|||..|||..||.||...|.|||||||.||.|||||||..|||||||..|
RBAM_018040__ 369 TGCTGTCCGGCGGCTGATGAAAACAAATATTCATAGAACAGAAGAGATGT 418
BSNT_02947___ 341 CAGTTTTGTTCGGCCTT-ATTTATTTGGCGGGAGGAGGATTTTGGTTTTT 389
|.|||.|| .|||..|| |||||||||||.||.||.|||||.|||||.||
RBAM_018040__ 419 CTGTTATG-GCGGGTTTCATTTATTTGGCCGGGGGCGGATTCTGGTTCTT 467
BSNT_02947___ 390 TGCTTATGCTGCCCATTTGCAGA------TCATGCAATTT-GGCCCTCTC 432
.||.|| ||.|| ||| ||| ||||| ||||| |||||.||.
RBAM_018040__ 468 CGCATA---TGTCC--TTG-AGATTCCCGTCATG-AATTTCGGCCCGCTT 510
BSNT_02947___ 433 ATCATTTTGCTTACTGCTGTCCACTTTCACTATTCTGCTTTTCTGATCCC 482
|||.||.||||.||.||.||.||||||||||||||.|||||.||.||.||
RBAM_018040__ 511 ATCGTTCTGCTGACGGCGGTGCACTTTCACTATTCCGCTTTCCTCATTCC 560
BSNT_02947___ 483 GATCTTCAACGGATTACTCGGCAGAACCAT----TAGAAAACATCGGATG 528
||||||.||||||||.||||||||.|.||| .||||| |||.|.
RBAM_018040__ 561 GATCTTTAACGGATTGCTCGGCAGGATCATACGGGAGAAA----CGGGTT 606
BSNT_02947___ 529 TTGTACAGTTGGATAACATGGG---TGATTTTGCTTTCGCCCCTTCTTAT 575
.|.|||||.||||..|| || |.||||||.|||||||..|.|||||
RBAM_018040__ 607 CTTTACAGATGGAGCAC---GGTCATTATTTTGATTTCGCCGATCCTTAT 653
BSNT_02947___ 576 CGCACTGGGCATCACATATTCAAAAACACTTGATGTCATTGCGGTTAGC- 624
.||.|||||.||.||||.||||||.|||||||||||.|||||.| |.||
RBAM_018040__ 654 TGCCCTGGGGATTACATTTTCAAAGACACTTGATGTGATTGCTG-TCGCT 702
BSNT_02947___ 625 ATTTATATGGCGGCGATTTATCTTCATGCATTTTTGGTGTTCACGGCAGC 674
.|.|||.||||||...|.|||.|..||||.|.|.|.||.||.|||||..|
RBAM_018040__ 703 CTGTATCTGGCGGGTCTGTATGTAAATGCTTATCTCGTCTTTACGGCGCC 752
BSNT_02947___ 675 TTTTCGCACCAAGACGG---GGACATTTCTT-ATTCGGCTTTCTTCCGCT 720
.|||...||.||.||.| ||| |||| ||..||..||||||.|||
RBAM_018040__ 753 GTTTGTTACGAAAACAGGCAGGA----TCTTGATCAGGAGTTCTTCGGCT 798
BSNT_02947___ 721 GTTTTAATGATAACGATTGCTTTCTCGATGATTTATTCATTTGGTGTATT 770
||.||||||||.||.||||||||.||..||||.|||||.|..|||||.|.
RBAM_018040__ 799 GTGTTAATGATCACAATTGCTTTTTCTTTGATATATTCGTACGGTGTCTA 848
BSNT_02947___ 771 TCGGCAAGAAGTTACATTGACCATCAATCAGATGATTTGGATTCACGGTT 820
.||..|.||.|..||..|.||.||||..||||||||||||||||||||..
RBAM_018040__ 849 CCGCGAGGAGGCAACGCTCACGATCAGCCAGATGATTTGGATTCACGGGG 898
BSNT_02947___ 821 TTGTCAATGCGTTTGGTGTTATCTTGCCCGCTCTCATAGGGTGGAGAATA 870
..||||||||.||.||.||||||.||||.|||.|....||||||||..|.
RBAM_018040__ 899 CCGTCAATGCATTCGGCGTTATCCTGCCGGCTTTGGCGGGGTGGAGGTTG 948
BSNT_02947___ 871 GAGGATGCGAAGCCTTTTGATGCAGACAGTGTAAAG-ACATTCAGCCGTA 919
||..||.|||..||.|||||||..|.||||| |||| ||.||||||||||
RBAM_018040__ 949 GAAAATCCGAGACCGTTTGATGAGGGCAGTG-AAAGAACGTTCAGCCGTA 997
BSNT_02947___ 920 TCTACGGAAAAAGAAAGATTGGAGAAGAATTTTTAGCTAACATTCAAGCT 969
|.|||||.||.||||.|||.||..||||||||||..||.|.|||||.||.
RBAM_018040__ 998 TTTACGGGAAGAGAACGATAGGCAAAGAATTTTTGACTGATATTCATGCA 1047
BSNT_02947___ 970 GAAAATAACGCTCGGTACAGCGGGCTTGTGGATGATATGGGCAG-CCTGC 1018
|.||||.||.|.|..||.|.|||.|||.|||||.|.|||.| || .||||
RBAM_018040__ 1048 GCAAATGACACCCATTATACCGGCCTTCTGGATCAGATGAG-AGAACTGC 1096
BSNT_02947___ 1019 GTTCAAAAGATTTTTCACCAGAAAAACTGGCGCCGCTCATTCTTTCGTTT 1068
.|||..||||.||||||.|.|||||||||||||||..|.||..|||.|||
RBAM_018040__ 1097 ATTCTGAAGACTTTTCAACTGAAAAACTGGCGCCGGCCGTTAATTCCTTT 1146
BSNT_02947___ 1069 TATGAACAAACCATCGAATACAATATTAAAGCAAAAGTAACATGGAGCAT 1118
||||||.|.||.||.||.||..|.||.|..||||||||.||.|||||||.
RBAM_018040__ 1147 TATGAAGAGACAATTGATTATGACATCATGGCAAAAGTGACGTGGAGCAG 1196
BSNT_02947___ 1119 GTGGTTTCGGCCGCTTGCAATTATTTACGAATGGTTCAGCAGAAGAATCG 1168
.||||||||.|||.|.||.....|.|||||...|||||||||||||...|
RBAM_018040__ 1197 ATGGTTTCGTCCGTTCGCGCGCGTGTACGAGCCGTTCAGCAGAAGAGCGG 1246
BSNT_02947___ 1169 GCCAAATACATCTTTCGACGAACCCTGACTGGTATAGGATGTACAGCAAG 1218
|.||.||.||.||.||.|.|||.||.||.|||||||..|||.||||..|.
RBAM_018040__ 1247 GGCAGATTCACCTGTCCATGAATCCGGATTGGTATATCATGCACAGTGAT 1296
BSNT_02947___ 1219 ATAAAAGGTGTTCATTCGAAAAAAGACGGAAGGGAAAGAGTACGTGCCTG 1268
||.|.|||.|||.|.||..|.||||||||.||..|||..||.|||||.||
RBAM_018040__ 1297 ATTATAGGAGTTGACTCTGACAAAGACGGCAGAAAAAATGTCCGTGCGTG 1346
BSNT_02947___ 1269 GATTAGAACAAATGAAAAAAACGAAACCATTTTTACCGCTCTTTATTCAG 1318
|||.||||||||||||||..|.||||||.|||||||.||.||.|||||||
RBAM_018040__ 1347 GATCAGAACAAATGAAAAGCAGGAAACCGTTTTTACTGCGCTGTATTCAG 1396
BSNT_02947___ 1319 TGTATCGTTCAAATGGAGAGGGGTATATGAATATTTCTTTACCGCTTCCA 1368
.|||..|..||||.||.||.||.||.||||||||.|||.|.|||||.||.
RBAM_018040__ 1397 CGTACAGGGCAAAAGGGGAAGGATACATGAATATCTCTCTTCCGCTGCCG 1446
BSNT_02947___ 1369 TTCAGCAGCATGACAGGTATTTTAAAACCATATCATCATCAGGAGAAGCT 1418
|.|.||...|||||.||.|||||||||||.|||...|.|.||.|.||.||
RBAM_018040__ 1447 TACGGCCAAATGACGGGCATTTTAAAACCTTATGCGCGTAAGCAAAATCT 1496
BSNT_02947___ 1419 GGTTTTAACAAGCAGGCGGAGAAAAAGCAGAGCGGGTGATGAGGGGATTT 1468
.|||||.||||||||.|||.||||||||.|||||||||||||.|||||||
RBAM_018040__ 1497 TGTTTTGACAAGCAGACGGCGAAAAAGCGGAGCGGGTGATGAAGGGATTT 1546
BSNT_02947___ 1469 ATCTGCAAACAAGAGCGGGAACTTGTCCGCTTCCTTTATCTGAAACCTTT 1518
|||||||.||.|.|..|||.||.||||..|||||..|..|.||.||.|||
RBAM_018040__ 1547 ATCTGCAGACGAAATGGGGGACGTGTCATCTTCCGCTGGCAGAGACATTT 1596
BSNT_02947___ 1519 CTGAT--------AGAAGCTGCACATGACAACAAATTAACGGCTGTTCAT 1560
||.|| ||| || ||.|.||...|.|.|||.||||||
RBAM_018040__ 1597 CTTATTTCAGCCCAGA----GC----GAAACCAGCCTGAAGGCCGTTCAT 1638
BSNT_02947___ 1561 CATATGTGGCTGTTTGGAATAAAATTTCTAACTGTTCATTACAGCATTAC 1610
||||||||||||||.|||.|.||||||.|||||||.|||||..|.||.||
RBAM_018040__ 1639 CATATGTGGCTGTTCGGACTGAAATTTTTAACTGTGCATTATCGGATCAC 1688
BSNT_02947___ 1611 ACAT---------ATTAACC--AGCCTATTGAAAGAACCTAA 1641
.||| ..||||| ||| |||.||
RBAM_018040__ 1689 TCATGCTTCCGCAGGTAACCGAAGC------AAATAA----- 1719
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