Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02092 and RBAM_017960

See DNA alignment / Visit BSNT_02092 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:48
# Commandline: needle
#    -asequence pep-align/BSNT_02092___yjmD.1.9828.seq
#    -bsequence pep-align/RBAM_017960___yjmD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02092___yjmD-RBAM_017960___yjmD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02092___yjmD-RBAM_017960___yjmD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02092___yjmD
# 2: RBAM_017960___yjmD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 339
# Identity:     258/339 (76.1%)
# Similarity:   289/339 (85.3%)
# Gaps:           0/339 ( 0.0%)
# Score: 1366.0
# 
#
#=======================================

BSNT_02092___      1 MKAIQVRKAYDLVTAEVKKPVLSKDDEVLVKVKRVGICGSDMHIYHGTNP     50
                     |||:.||||:|||..|.:|..:...|:||||||||||||||:||||||||
RBAM_017960__      1 MKAVLVRKAFDLVVTECEKTSVVHADDVLVKVKRVGICGSDLHIYHGTNP     50

BSNT_02092___     51 LATLPRVIGHEVTGQVEAVGANVQSLKPGDHVVIEPISYCGSCYACRKGR    100
                     ||:|||||||||||:|...|::|:..||||.||:|||||||:||||||||
RBAM_017960__     51 LASLPRVIGHEVTGEVANTGSHVRRFKPGDRVVVEPISYCGTCYACRKGR    100

BSNT_02092___    101 PNVCAKLSVFGVHEDGGMREYIVLPERQLHAVSKDLPWEEAVMAEPYTIG    150
                     ||||..|||||||||||||||||:||:||||||.||||||||||||||||
RBAM_017960__    101 PNVCKALSVFGVHEDGGMREYIVVPEKQLHAVSPDLPWEEAVMAEPYTIG    150

BSNT_02092___    151 AQAVWRGQVEKGDTVLIQGAGPIGICVLKMAKLAGAAVMMTDLNNDRLAF    200
                     |||||||:|||.|||||.||||||||:|||||..||:||:||||::||||
RBAM_017960__    151 AQAVWRGRVEKEDTVLIHGAGPIGICILKMAKFKGASVMITDLNDERLAF    200

BSNT_02092___    201 AKENGADAVVNVQAEHVAERVLEWTGNEGANVVIDAVCLPETFALSIEAV    250
                     |::||||..||.|.|....||.|||..|||||||||||||.||..||:||
RBAM_017960__    201 AEKNGADVTVNAQKEDPVLRVNEWTKKEGANVVIDAVCLPSTFETSIDAV    250

BSNT_02092___    251 SPAGHVVVLGFDERAAQISQLPITKKEVTITGSRLQTNQFPKVVELLNGG    300
                     ||||||||||||||...||||||||||||||||||||||||.:.:|||.|
RBAM_017960__    251 SPAGHVVVLGFDERTVGISQLPITKKEVTITGSRLQTNQFPYITDLLNKG    300

BSNT_02092___    301 RLMHNGLVTHTFSVDDVHHAFQFIKEHPDQVRKAVITFD    339
                     .|.|.||:|||||.||||.|||.|::||.:|.||:||||
RBAM_017960__    301 LLTHGGLITHTFSADDVHQAFQLIEQHPGKVGKAIITFD    339


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