Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_02092 and RBAM_017960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence pep-align/BSNT_02092___yjmD.1.9828.seq
# -bsequence pep-align/RBAM_017960___yjmD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_02092___yjmD-RBAM_017960___yjmD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02092___yjmD-RBAM_017960___yjmD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02092___yjmD
# 2: RBAM_017960___yjmD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 339
# Identity: 258/339 (76.1%)
# Similarity: 289/339 (85.3%)
# Gaps: 0/339 ( 0.0%)
# Score: 1366.0
#
#
#=======================================
BSNT_02092___ 1 MKAIQVRKAYDLVTAEVKKPVLSKDDEVLVKVKRVGICGSDMHIYHGTNP 50
|||:.||||:|||..|.:|..:...|:||||||||||||||:||||||||
RBAM_017960__ 1 MKAVLVRKAFDLVVTECEKTSVVHADDVLVKVKRVGICGSDLHIYHGTNP 50
BSNT_02092___ 51 LATLPRVIGHEVTGQVEAVGANVQSLKPGDHVVIEPISYCGSCYACRKGR 100
||:|||||||||||:|...|::|:..||||.||:|||||||:||||||||
RBAM_017960__ 51 LASLPRVIGHEVTGEVANTGSHVRRFKPGDRVVVEPISYCGTCYACRKGR 100
BSNT_02092___ 101 PNVCAKLSVFGVHEDGGMREYIVLPERQLHAVSKDLPWEEAVMAEPYTIG 150
||||..|||||||||||||||||:||:||||||.||||||||||||||||
RBAM_017960__ 101 PNVCKALSVFGVHEDGGMREYIVVPEKQLHAVSPDLPWEEAVMAEPYTIG 150
BSNT_02092___ 151 AQAVWRGQVEKGDTVLIQGAGPIGICVLKMAKLAGAAVMMTDLNNDRLAF 200
|||||||:|||.|||||.||||||||:|||||..||:||:||||::||||
RBAM_017960__ 151 AQAVWRGRVEKEDTVLIHGAGPIGICILKMAKFKGASVMITDLNDERLAF 200
BSNT_02092___ 201 AKENGADAVVNVQAEHVAERVLEWTGNEGANVVIDAVCLPETFALSIEAV 250
|::||||..||.|.|....||.|||..|||||||||||||.||..||:||
RBAM_017960__ 201 AEKNGADVTVNAQKEDPVLRVNEWTKKEGANVVIDAVCLPSTFETSIDAV 250
BSNT_02092___ 251 SPAGHVVVLGFDERAAQISQLPITKKEVTITGSRLQTNQFPKVVELLNGG 300
||||||||||||||...||||||||||||||||||||||||.:.:|||.|
RBAM_017960__ 251 SPAGHVVVLGFDERTVGISQLPITKKEVTITGSRLQTNQFPYITDLLNKG 300
BSNT_02092___ 301 RLMHNGLVTHTFSVDDVHHAFQFIKEHPDQVRKAVITFD 339
.|.|.||:|||||.||||.|||.|::||.:|.||:||||
RBAM_017960__ 301 LLTHGGLITHTFSADDVHQAFQLIEQHPGKVGKAIITFD 339
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