Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02092 and RBAM_017960

See Amino acid alignment / Visit BSNT_02092 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:48
# Commandline: needle
#    -asequence dna-align/BSNT_02092___yjmD.1.9828.seq
#    -bsequence dna-align/RBAM_017960___yjmD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02092___yjmD-RBAM_017960___yjmD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02092___yjmD-RBAM_017960___yjmD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02092___yjmD
# 2: RBAM_017960___yjmD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1044
# Identity:     771/1044 (73.9%)
# Similarity:   771/1044 (73.9%)
# Gaps:          48/1044 ( 4.6%)
# Score: 2750.5
# 
#
#=======================================

BSNT_02092___      1 ATGAAAGCGATTCAAGTGCGAAAAGCGTATGATCTGGTGACAGCGG-AGG     49
                     |||||||||.|||.|||.||.|||||.|.||||||||||....||| |.|
RBAM_017960__      1 ATGAAAGCGGTTCTAGTACGGAAAGCATTTGATCTGGTGGTGACGGAATG     50

BSNT_02092___     50 TGAAGAA---GCCAGTTCTTTCAA--AGGATGATGAAGTGCTCGTGAAAG     94
                     || ||||   |.|.||  |.||.|  .|||||||   ||.||.||.||.|
RBAM_017960__     51 TG-AGAAAACGTCTGT--TGTCCACGCGGATGAT---GTTCTTGTCAAGG     94

BSNT_02092___     95 TCAAGCGAGTCGGCATTTGCGGTTCAGACATGCACATTTATCATGGAACG    144
                     |.|||||.|||||.||||||||.|||||..||||.|||||||||||.||.
RBAM_017960__     95 TGAAGCGGGTCGGAATTTGCGGATCAGATTTGCATATTTATCATGGGACA    144

BSNT_02092___    145 AATCCGCTTGCTACCCTCCCGAGAGTTATCGGACACGAGGTAACGGGACA    194
                     ||||||.|.||..||||.||||||||.||||||||.||.||.||.||..|
RBAM_017960__    145 AATCCGTTAGCGTCCCTGCCGAGAGTAATCGGACATGAAGTTACAGGGGA    194

BSNT_02092___    195 AGTGGAGGCAGTT---GGTGCGAATGTACAGAGCCTAAAACCCGGTGATC    241
                     |||   .|||..|   |||.|..||||.|.|.|..|.||.||.|||||.|
RBAM_017960__    195 AGT---CGCAAATACCGGTTCTCATGTTCGGCGTTTCAAGCCGGGTGACC    241

BSNT_02092___    242 ATGTGGTGATTGAGCCGATTTCTTATTGCGGATCGTGCTATGCCTGCCGC    291
                     ..||.|||.||||.|||||.||||||||||||.|.||||||||||||||.
RBAM_017960__    242 GCGTAGTGGTTGAACCGATATCTTATTGCGGAACATGCTATGCCTGCCGG    291

BSNT_02092___    292 AAAGGGCGGCCGAATGTTTGCGCCAA---GCTTTCTGTATTTGGCGTACA    338
                     |||||.||.|||||.||.||   |||   ||||||.||.||.|||||.||
RBAM_017960__    292 AAAGGACGTCCGAACGTCTG---CAAAGCGCTTTCGGTGTTCGGCGTTCA    338

BSNT_02092___    339 TGAGGACGGAGGCATGCGGGAATATATTGTGCTTCCGGAAAGGCAGCTTC    388
                     |||.||.||.||.||||||||||||||.|||.|||||||||.||||||.|
RBAM_017960__    339 TGAAGATGGCGGGATGCGGGAATATATCGTGGTTCCGGAAAAGCAGCTGC    388

BSNT_02092___    389 ACGCGGTCTCAAAGGACTTGCCTTGGGAGGAAGCAGTCATGGCCGAGCCT    438
                     |.||.||.||....||..||||.|||||||||||.||||||||.||.||.
RBAM_017960__    389 ATGCCGTTTCCCCCGATCTGCCCTGGGAGGAAGCGGTCATGGCAGAACCA    438

BSNT_02092___    439 TATACGATAGGCGCCCAGGCAGTGTGGAGAGGCCAGGTGGAAAAAGGTGA    488
                     ||||||||.|||||||||||.||.||||||||||..||.||.||.|..||
RBAM_017960__    439 TATACGATCGGCGCCCAGGCCGTTTGGAGAGGCCGTGTCGAGAAGGAAGA    488

BSNT_02092___    489 TACCGTCCTGATCCAGGGAGCGGGACCCATCGGGATCTGTGTGTTGAAAA    538
                     ||||||..||||.||.||.||||||||.|||||.|||||..|.||.||||
RBAM_017960__    489 TACCGTTTTGATTCATGGGGCGGGACCGATCGGAATCTGCATATTAAAAA    538

BSNT_02092___    539 TGGCAAAACTGGCGGGCGCTGCTGTCATGATGACTGACTTGAACAACGAT    588
                     |||||||..|....||||||.|.||||||||.||.||||||||..|.||.
RBAM_017960__    539 TGGCAAAGTTCAAAGGCGCTTCCGTCATGATAACCGACTTGAATGATGAA    588

BSNT_02092___    589 CGGCTGGCATTTGC-GAAAGAAAACGGCGCCGATGCTGTTGTAAATGTCC    637
                     ||..|||||||.|| |||| |||||||.||.||.|.|...||.||.|..|
RBAM_017960__    589 CGCTTGGCATTCGCTGAAA-AAAACGGTGCGGACGTTACCGTCAACGCGC    637

BSNT_02092___    638 AAGCAGAACAT---GTTGCCGAGCGGGTCCTTGAATGGACTGGGAATGAA    684
                     ||..||||.||   |||   ..||||||....||||||||....||.|||
RBAM_017960__    638 AAAAAGAAGATCCCGTT---TTGCGGGTGAACGAATGGACAAAAAAAGAA    684

BSNT_02092___    685 GGAGCAAACGTGGTCATTGATGCTGTTTGCCTGCCGGAGACTTTTGCACT    734
                     ||.||.||.||.|||||||||||.||.||.||.|||...||.||||.|..
RBAM_017960__    685 GGCGCCAATGTCGTCATTGATGCCGTCTGTCTCCCGTCAACGTTTGAAAC    734

BSNT_02092___    735 TTCAATTGAGGCTGTGTCACCGGCGGGACATGTGGTTGTGCTTGGATTTG    784
                     .||.|||||.||.|||||.|||||.||.|||||||||||||||||.||||
RBAM_017960__    735 GTCCATTGACGCGGTGTCTCCGGCCGGTCATGTGGTTGTGCTTGGTTTTG    784

BSNT_02092___    785 ATGAAAGAG------CGGCTCAGATTTCTCAGCTGCCGATTACAAAAAAA    828
                     |||  ||||      ||||    |||||||||||.|||||.||||||||.
RBAM_017960__    785 ATG--AGAGGACTGTCGGC----ATTTCTCAGCTTCCGATCACAAAAAAG    828

BSNT_02092___    829 GAAGTCACGATAACCGGATCCCGATTGCAGACCAATCAGTTTCCAAAAGT    878
                     |||||||||||||||||.||..||||||||||.|||||||||||..|..|
RBAM_017960__    829 GAAGTCACGATAACCGGTTCAAGATTGCAGACGAATCAGTTTCCGTACAT    878

BSNT_02092___    879 GGTAGAGCTTT--TGAATGGAGGCCGGTTAATGCATAACGGGCTGGTGAC    926
                       ||.||..||  |||||..|||||.|||||.|||...|||.||..|.||
RBAM_017960__    879 --TACAGACTTACTGAATAAAGGCCTGTTAACGCACGGCGGTCTTATTAC    926

BSNT_02092___    927 CCATACATTTTCAGTTGATGACGTTCATCATGCATTTCAGTTTATTAAGG    976
                     .|||||||||||||..||||||||.|||||.|||||||||||.||..|..
RBAM_017960__    927 ACATACATTTTCAGCAGATGACGTCCATCAAGCATTTCAGTTGATCGAAC    976

BSNT_02092___    977 AGCATCCAGATCAGGTGCGAAAAGCCGTCATCACGTTTGATTAA   1020
                     ||||.||.|...|||||.|||||||..||||.||||||||||||
RBAM_017960__    977 AGCACCCGGGCAAGGTGGGAAAAGCAATCATTACGTTTGATTAA   1020


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02092 and RBAM_017960

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
