Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02092 and RBAM_017960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence dna-align/BSNT_02092___yjmD.1.9828.seq
# -bsequence dna-align/RBAM_017960___yjmD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02092___yjmD-RBAM_017960___yjmD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02092___yjmD-RBAM_017960___yjmD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02092___yjmD
# 2: RBAM_017960___yjmD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1044
# Identity: 771/1044 (73.9%)
# Similarity: 771/1044 (73.9%)
# Gaps: 48/1044 ( 4.6%)
# Score: 2750.5
#
#
#=======================================
BSNT_02092___ 1 ATGAAAGCGATTCAAGTGCGAAAAGCGTATGATCTGGTGACAGCGG-AGG 49
|||||||||.|||.|||.||.|||||.|.||||||||||....||| |.|
RBAM_017960__ 1 ATGAAAGCGGTTCTAGTACGGAAAGCATTTGATCTGGTGGTGACGGAATG 50
BSNT_02092___ 50 TGAAGAA---GCCAGTTCTTTCAA--AGGATGATGAAGTGCTCGTGAAAG 94
|| |||| |.|.|| |.||.| .||||||| ||.||.||.||.|
RBAM_017960__ 51 TG-AGAAAACGTCTGT--TGTCCACGCGGATGAT---GTTCTTGTCAAGG 94
BSNT_02092___ 95 TCAAGCGAGTCGGCATTTGCGGTTCAGACATGCACATTTATCATGGAACG 144
|.|||||.|||||.||||||||.|||||..||||.|||||||||||.||.
RBAM_017960__ 95 TGAAGCGGGTCGGAATTTGCGGATCAGATTTGCATATTTATCATGGGACA 144
BSNT_02092___ 145 AATCCGCTTGCTACCCTCCCGAGAGTTATCGGACACGAGGTAACGGGACA 194
||||||.|.||..||||.||||||||.||||||||.||.||.||.||..|
RBAM_017960__ 145 AATCCGTTAGCGTCCCTGCCGAGAGTAATCGGACATGAAGTTACAGGGGA 194
BSNT_02092___ 195 AGTGGAGGCAGTT---GGTGCGAATGTACAGAGCCTAAAACCCGGTGATC 241
||| .|||..| |||.|..||||.|.|.|..|.||.||.|||||.|
RBAM_017960__ 195 AGT---CGCAAATACCGGTTCTCATGTTCGGCGTTTCAAGCCGGGTGACC 241
BSNT_02092___ 242 ATGTGGTGATTGAGCCGATTTCTTATTGCGGATCGTGCTATGCCTGCCGC 291
..||.|||.||||.|||||.||||||||||||.|.||||||||||||||.
RBAM_017960__ 242 GCGTAGTGGTTGAACCGATATCTTATTGCGGAACATGCTATGCCTGCCGG 291
BSNT_02092___ 292 AAAGGGCGGCCGAATGTTTGCGCCAA---GCTTTCTGTATTTGGCGTACA 338
|||||.||.|||||.||.|| ||| ||||||.||.||.|||||.||
RBAM_017960__ 292 AAAGGACGTCCGAACGTCTG---CAAAGCGCTTTCGGTGTTCGGCGTTCA 338
BSNT_02092___ 339 TGAGGACGGAGGCATGCGGGAATATATTGTGCTTCCGGAAAGGCAGCTTC 388
|||.||.||.||.||||||||||||||.|||.|||||||||.||||||.|
RBAM_017960__ 339 TGAAGATGGCGGGATGCGGGAATATATCGTGGTTCCGGAAAAGCAGCTGC 388
BSNT_02092___ 389 ACGCGGTCTCAAAGGACTTGCCTTGGGAGGAAGCAGTCATGGCCGAGCCT 438
|.||.||.||....||..||||.|||||||||||.||||||||.||.||.
RBAM_017960__ 389 ATGCCGTTTCCCCCGATCTGCCCTGGGAGGAAGCGGTCATGGCAGAACCA 438
BSNT_02092___ 439 TATACGATAGGCGCCCAGGCAGTGTGGAGAGGCCAGGTGGAAAAAGGTGA 488
||||||||.|||||||||||.||.||||||||||..||.||.||.|..||
RBAM_017960__ 439 TATACGATCGGCGCCCAGGCCGTTTGGAGAGGCCGTGTCGAGAAGGAAGA 488
BSNT_02092___ 489 TACCGTCCTGATCCAGGGAGCGGGACCCATCGGGATCTGTGTGTTGAAAA 538
||||||..||||.||.||.||||||||.|||||.|||||..|.||.||||
RBAM_017960__ 489 TACCGTTTTGATTCATGGGGCGGGACCGATCGGAATCTGCATATTAAAAA 538
BSNT_02092___ 539 TGGCAAAACTGGCGGGCGCTGCTGTCATGATGACTGACTTGAACAACGAT 588
|||||||..|....||||||.|.||||||||.||.||||||||..|.||.
RBAM_017960__ 539 TGGCAAAGTTCAAAGGCGCTTCCGTCATGATAACCGACTTGAATGATGAA 588
BSNT_02092___ 589 CGGCTGGCATTTGC-GAAAGAAAACGGCGCCGATGCTGTTGTAAATGTCC 637
||..|||||||.|| |||| |||||||.||.||.|.|...||.||.|..|
RBAM_017960__ 589 CGCTTGGCATTCGCTGAAA-AAAACGGTGCGGACGTTACCGTCAACGCGC 637
BSNT_02092___ 638 AAGCAGAACAT---GTTGCCGAGCGGGTCCTTGAATGGACTGGGAATGAA 684
||..||||.|| ||| ..||||||....||||||||....||.|||
RBAM_017960__ 638 AAAAAGAAGATCCCGTT---TTGCGGGTGAACGAATGGACAAAAAAAGAA 684
BSNT_02092___ 685 GGAGCAAACGTGGTCATTGATGCTGTTTGCCTGCCGGAGACTTTTGCACT 734
||.||.||.||.|||||||||||.||.||.||.|||...||.||||.|..
RBAM_017960__ 685 GGCGCCAATGTCGTCATTGATGCCGTCTGTCTCCCGTCAACGTTTGAAAC 734
BSNT_02092___ 735 TTCAATTGAGGCTGTGTCACCGGCGGGACATGTGGTTGTGCTTGGATTTG 784
.||.|||||.||.|||||.|||||.||.|||||||||||||||||.||||
RBAM_017960__ 735 GTCCATTGACGCGGTGTCTCCGGCCGGTCATGTGGTTGTGCTTGGTTTTG 784
BSNT_02092___ 785 ATGAAAGAG------CGGCTCAGATTTCTCAGCTGCCGATTACAAAAAAA 828
||| |||| |||| |||||||||||.|||||.||||||||.
RBAM_017960__ 785 ATG--AGAGGACTGTCGGC----ATTTCTCAGCTTCCGATCACAAAAAAG 828
BSNT_02092___ 829 GAAGTCACGATAACCGGATCCCGATTGCAGACCAATCAGTTTCCAAAAGT 878
|||||||||||||||||.||..||||||||||.|||||||||||..|..|
RBAM_017960__ 829 GAAGTCACGATAACCGGTTCAAGATTGCAGACGAATCAGTTTCCGTACAT 878
BSNT_02092___ 879 GGTAGAGCTTT--TGAATGGAGGCCGGTTAATGCATAACGGGCTGGTGAC 926
||.||..|| |||||..|||||.|||||.|||...|||.||..|.||
RBAM_017960__ 879 --TACAGACTTACTGAATAAAGGCCTGTTAACGCACGGCGGTCTTATTAC 926
BSNT_02092___ 927 CCATACATTTTCAGTTGATGACGTTCATCATGCATTTCAGTTTATTAAGG 976
.|||||||||||||..||||||||.|||||.|||||||||||.||..|..
RBAM_017960__ 927 ACATACATTTTCAGCAGATGACGTCCATCAAGCATTTCAGTTGATCGAAC 976
BSNT_02092___ 977 AGCATCCAGATCAGGTGCGAAAAGCCGTCATCACGTTTGATTAA 1020
||||.||.|...|||||.|||||||..||||.||||||||||||
RBAM_017960__ 977 AGCACCCGGGCAAGGTGGGAAAAGCAATCATTACGTTTGATTAA 1020
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