Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03294 and RBAM_017950

See DNA alignment / Visit BSNT_03294 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:27
# Commandline: needle
#    -asequence pep-align/BSNT_03294___kdgK.1.9828.seq
#    -bsequence pep-align/RBAM_017950.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03294___kdgK-RBAM_017950.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03294___kdgK-RBAM_017950.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03294___kdgK
# 2: RBAM_017950
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 338
# Identity:     103/338 (30.5%)
# Similarity:   149/338 (44.1%)
# Gaps:          34/338 (10.1%)
# Score: 342.0
# 
#
#=======================================

BSNT_03294___      1 MKLD--AVTFGESMAMFYANEYGGLHEVSTFSKGLAGAESNVACGLARLG     48
                     |..|  ..|.|::|........|.|..|:.|.:...|||.|.|...|||.
RBAM_017950        1 MASDYGIFTIGDAMITLNPASTGPLRFVTHFERKAGGAELNFAIACARLN     50

BSNT_03294___     49 FRMGWMSKVGNDQLGTFILQELKKEGVDVSRVIRSQDEN-PTGLLLKSKV     97
                     ....|:|::|.|:.|..|.|..:.||:||:.|  |..|. ||.|.:|...
RBAM_017950       51 LHSKWVSRLGKDEFGRVIYQFARGEGIDVTDV--SYVEGFPTSLNVKEIR     98

BSNT_03294___     98 KEGDPQVTYYRKNSAASTLTSAEYPRDYFQCAGHLHVTGIPPALSAEMKD    147
                     .:|..:..|||.||...||...:...:.|.....:|:||:..||..:..:
RBAM_017950       99 NDGSGKTFYYRFNSPILTLAPEDITENMFDGIHIVHLTGVFLALDKKNLE    148

BSNT_03294___    148 FTYHVMNDMRNAGKTISFDPNVRPSLWPDQATMVHTINDLAGLADWFFP-    196
                     ....|::..:.....:|||||:|..||        ||.:........|| 
RBAM_017950      149 IAERVLSIAKARKIPVSFDPNIRLKLW--------TIEEARAAFHQIFPH    190

BSNT_03294___    197 ------GIAEGELLTGEKTPEGIADYYLKKGASFVAIKLGKEGAYF----    236
                           |..|.:.|||....|.:|.:......|.:.||.|:.|:..    
RBAM_017950      191 TDILLAGRDEMKQLTGIGENEALARFAETYSISQLVIKDGESGSALYHDH    240

BSNT_03294___    237 KTGTSEGFLEGCRVDRVVDTVGAGDGFAVGVISGVLDGLSYKDAVQRGNA    286
                     |....|.|...     .||||||||||..|.:...|.|...:..::..||
RBAM_017950      241 KWIHKEAFPVA-----PVDTVGAGDGFNAGYLYSYLHGFEPEKRLEFANA    285

BSNT_03294___    287 IGALQVQAPGDMDGLPTREKLASFLSAQRTVHQKKGDY    324
                     :|||.....||.:|||..|::.||::.:..:.:     
RBAM_017950      286 VGALVTTVSGDNEGLPYLEEVLSFVNKETVIER-----    318


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