Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03294 and RBAM_017950
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:27
# Commandline: needle
# -asequence dna-align/BSNT_03294___kdgK.1.9828.seq
# -bsequence dna-align/RBAM_017950.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03294___kdgK-RBAM_017950.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03294___kdgK-RBAM_017950.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03294___kdgK
# 2: RBAM_017950
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1200
# Identity: 558/1200 (46.5%)
# Similarity: 558/1200 (46.5%)
# Gaps: 468/1200 (39.0%)
# Score: 968.0
#
#
#=======================================
BSNT_03294___ 1 ATGAAGCTTGATGCGGTGACATTCGGGGAATCAATGGCCATGTTTTACGC 50
|||.| |||.| || .|||| ||| |||||||
RBAM_017950 1 ---------------GTGGC-TTCTG---AT-TATGG-CAT-TTTTACG- 27
BSNT_03294___ 51 AAATGAGT-ATG-GAGG----CCTTCATGAAGTATCC------------A 82
||..|| ||| ||.| ||||.| |||| |
RBAM_017950 28 --ATCGGTGATGCGATGATCACCTTAA------ATCCCGCAAGCACAGGA 69
BSNT_03294___ 83 CTTTTTC----------------------TAAAG--GGCTTGCCGGAGCA 108
|.|||.| .|||| || .|||||.
RBAM_017950 70 CCTTTGCGTTTTGTTACCCATTTTGAACGAAAAGCAGG-----AGGAGCT 114
BSNT_03294___ 109 GAAAGCAATGTCGCCTGCG---GCCT-TGCCAGACTCGGATTCCG----- 149
|||...|||.| |||| ||.| .||||||.| ||.||.|
RBAM_017950 115 GAACTGAATTT----TGCGATTGCATGCGCCAGATT--GAATCTGCACTC 158
BSNT_03294___ 150 AATGGGATGGATGAGCAAGGTCGGCAATGATCAGCTCGGAACG-----TT 194
||.| |||.|.||||...|.||.||.|||.||.||||.| | ||
RBAM_017950 159 AAAG---TGGGTCAGCAGACTGGGGAAGGATGAGTTCGGCA-GAGTGATT 204
BSNT_03294___ 195 TAT---TTTACAAGAGCTTAAAAAAGAGGGAGTGGATGTGTCCCGTGTGA 241
||| |||.|.|||| .|||.|||.|.||||||.| |||
RBAM_017950 205 TATCAGTTTGCCAGAG-------GAGAAGGAATTGATGTGAC-----TGA 242
BSNT_03294___ 242 TCCG-CTCGCAGGACGAAAATCCCACCGGGCTGCTGCTTAAGTC---AAA 287
|| |||..|.|..||| |||| |.|.||..|| |||
RBAM_017950 243 --CGTCTCCTATGTTGAA----------GGCT--TTCCTACATCTTTAAA 278
BSNT_03294___ 288 AGTGAAAGAAGGCGACCCGCAA-----GTTACCTACTATAGGAAAAAC-- 330
.||.||||| ||.|.|.|| ||| .|||.|||||
RBAM_017950 279 TGTCAAAGA----GATCAGAAATGACGGTT--------CAGGCAAAACGT 316
BSNT_03294___ 331 -------TCAGCTGCAAGCACATTAAC---TTCTG----------CTGA- 359
|| |.|.|| |||.|| ||||| |.||
RBAM_017950 317 TTTATTATC-GTTTCA-----ATTCACCAATTCTGACTCTTGCACCGGAA 360
BSNT_03294___ 360 -ATATCCGAGAGATTATTTTCAATGCGCAGGCCATT-------TGCATGT 401
||||...|||||.|||.|| || |.|.|||| |.|||.|
RBAM_017950 361 GATATAACAGAGAATATGTT---TG---ACGGCATTCACATCGTTCATCT 404
BSNT_03294___ 402 GACAG--GCATTCCGCCTGC-CTTATCAGCCGAGATGAAAGA-CTTCA-- 445
.||.| |..||||.| || ||| ||.|.||||.| |||.|
RBAM_017950 405 TACCGGTGTGTTCCTC--GCGCTT-------GATAAGAAAAATCTTGAAA 445
BSNT_03294___ 446 --------------CGTACCATGTCATGAACGACATGAGAAACGCAGGGA 481
|.|.|||| ||.| ||.|||.|.|
RBAM_017950 446 TTGCTGAAAGGGTGCTTTCCAT--------CGCC------AAAGCAAGAA 481
BSNT_03294___ 482 AAA---CCATTTCATTCGACCCTAATGTAAGACCTTCGCTTTGGCCTGAT 528
|.| ||.|.||.||.||.||.|||.|.||.|....|||.|||.| |||
RBAM_017950 482 AGATTCCCGTATCTTTTGATCCGAATATCAGGCTGAAGCTGTGGAC-GAT 530
BSNT_03294___ 529 CAAGCAACAATGG------------TACACACAATCAACGATCTGGCTGG 566
..||.| || |.| ||||| ||||
RBAM_017950 531 TGAGGA-----GGCGCGTGCGGCATTTC-----ATCAA--ATCT------ 562
BSNT_03294___ 567 GCTT--GCAGACTG--GTTTTTCCCGGGTATCGCAGAGGGAGAGCTATTG 612
|| |||.|||| .||.||| |.|| |||
RBAM_017950 563 --TTCCGCATACTGATATTCTTC-------TGGC---GGG---------- 590
BSNT_03294___ 613 ACCGG--AGAAA--AAACACCTGA-AGGCATTGCCGACTATTATTTGAAA 657
|||| .|||| |||||.|||| |||.| ||...||||
RBAM_017950 591 -CCGGGACGAAATGAAACAGCTGACAGGTA-----------TAGGGGAAA 628
BSNT_03294___ 658 A--AAG---GTGCCAGCTTTGTCG----CTATTAAA--------CTCG-- 688
| ||| ..|||.|.||||..| |||||.|| ||||
RBAM_017950 629 ATGAAGCATTAGCCCGGTTTGCAGAGACCTATTCAATCAGTCAGCTCGTC 678
BSNT_03294___ 689 -GAAAAGAAG--------------GCGCTTACTTTAAAACGGGGACAAGT 723
.||||||.| ||| ||.||..|.|...|.||||
RBAM_017950 679 ATAAAAGACGGTGAATCAGGTTCTGCG----CTGTATCATGATCATAAGT 724
BSNT_03294___ 724 GAAGGATT-TCTAGAAGGCTGCCGGGTCGACCGGGTG-----GTTGATAC 767
||||| .|.|..|||||..| ||||.|| |||||.||
RBAM_017950 725 ---GGATTCACAAAGAGGCTTTC-------CCGGTTGCGCCTGTTGACAC 764
BSNT_03294___ 768 GGTCGGCGCCGGAGACGGATTTGCAGTCGG-----TGTA-----ATCAGC 807
|||.||.||.||.|||||.|||...|.||| |||| |||.||
RBAM_017950 765 GGTAGGAGCGGGTGACGGCTTTAATGCCGGCTACCTGTACAGTTATCTGC 814
BSNT_03294___ 808 GGTGTCCTAGACGGTTTGTCGTACAAGGATGCGGTGCAAAGGGGAAATGC 857
|.||||| || ||..|||||..|
RBAM_017950 815 ----------ATGGTTT-----------------TG--AACCGGAAAAAC 835
BSNT_03294___ 858 GATTGGCGCTTTGCAAGTGCAGGCACCGGGGGATATGGACGGTTTGC-CG 906
|..|||.| |||||.|.||| ||.||||..|| ||
RBAM_017950 836 GTCTGGAG-TTTGCCAATGC----------------GGTCGGTGCGCTCG 868
BSNT_03294___ 907 --ACCA-------GGGAGA-AATTA---GCTTCTTTTTTATCTGCTCAAA 943
|||| .||.|| |||.| ||||| ..||||| |
RBAM_017950 869 TCACCACAGTTTCCGGTGACAATGAAGGGCTTC---CCTATCT------A 909
BSNT_03294___ 944 GAA-CGGTTC------ACCAAAAGAAAG-----GGGATTATTAA------ 975
||| .||||| .|..|||.|||| |.||| |.||
RBAM_017950 910 GAAGAGGTTCTGTCATTCGTAAACAAAGAGACTGTGAT--TGAACGGTAG 957
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