Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03883 and RBAM_017030

See DNA alignment / Visit BSNT_03883 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence pep-align/BSNT_03883___cypA.1.9828.seq
#    -bsequence pep-align/RBAM_017030___baeS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03883___cypA-RBAM_017030___baeS.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03883___cypA-RBAM_017030___baeS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03883___cypA
# 2: RBAM_017030___baeS
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 422
# Identity:     175/422 (41.5%)
# Similarity:   255/422 (60.4%)
# Gaps:          31/422 ( 7.3%)
# Score: 848.0
# 
#
#=======================================

BSNT_03883___      1 MSSKEKNSVTILTESQLSSRAFKDEAYEFYK-------ELRKSQPLYPLS     43
                                     :....|...:.||::       ..|:..|::...
RBAM_017030__      1 ----------------MEKTMFHPHSPEFHENPFAVLSRFREQDPIHKFE     34

BSNT_03883___     44 LGALG---KGWLISRYEDAIHLLKNEKLKKNYENVFTAKEKRPALLKNE-     89
                     |...|   ..|||:||:|.:..||:.::.::.:.|. .||....|..:| 
RBAM_017030__     35 LQRFGGTFPAWLITRYDDCMAFLKDGRITRDVKRVM-PKELIAKLNVSED     83

BSNT_03883___     90 -ESLTKHMLNSDPPDHNRLRTLVQKAFTHRMIFQLEDKIQHIADSLLDKV    138
                      :.:::|||..|||||:|||:||.:.||.|||.||...|:.|.:.|||::
RBAM_017030__     84 IDFVSEHMLAKDPPDHSRLRSLVHQGFTPRMIEQLRTGIEQITEELLDEM    133

BSNT_03883___    139 QPNKFMNLVDDYAFPLPIIVISEMLGIPLEDRQKFRVWSQAIIDFSDAPE    188
                     :.....:::.|:|.|||.|||||:||||.|||.||:||:.|::|.|::.:
RBAM_017030__    134 ETKADPDIMRDFAAPLPFIVISELLGIPKEDRAKFQVWTNAMVDTSESGQ    183

BSNT_03883___    189 RLQENDHLLGEFVEYLESLVRKKRSEPSGDLISALIQAESEGTQLSTEEL    238
                       ...:..|.||.:|:::|:.:||..|..||.|.||.||.:|.:||..||
RBAM_017030__    184 --DATNQALKEFKQYMKTLIEEKRKHPGEDLTSKLIYAEEDGQKLSESEL    231

BSNT_03883___    239 YSMIMLLIVIGHETTVNLITNMTYALMCHGDQLEKLRQQPDLMNSAIEEA    288
                     |||:.||:|.|.||||||:.:.|.||:.|.||:||:::||:.:.:|:||.
RBAM_017030__    232 YSMLFLLVVAGLETTVNLLGSGTLALLLHKDQMEKIKRQPENIQTAVEEL    281

BSNT_03883___    289 LWFHSPVELTTIRWTAEPFMLHGQEIKRKDVIIISLASANRDEKIFPNAD    338
                     |.:.|||.:...||..|.|......||:.|:|.|.:.|||||.:.|.:.|
RBAM_017030__    282 LRYTSPVIMMANRWAIEDFTYKDVSIKKGDMIFIGIGSANRDPEYFDDPD    331

BSNT_03883___    339 IFDIERKNNRHIAFGHGNHFCLGAQLARLEAKIAISTLLRRCPNIQLKGE    388
                     ..:|.|..||||:||.|.||||||.|||:||.||.:.||:|.|||:|||.
RBAM_017030__    332 TLNIARTPNRHISFGFGIHFCLGAPLARMEASIAFTALLKRFPNIELKGA    381

BSNT_03883___    389 KEQIKWKGNFLMRALEELPLSF    410
                     .|.:.|:.|..:|.||.||:.|
RBAM_017030__    382 AEDVTWRKNVFLRGLETLPVRF    403


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