Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03883 and RBAM_017030
See
Amino acid alignment /
Visit
BSNT_03883 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:11
# Commandline: needle
# -asequence dna-align/BSNT_03883___cypA.1.9828.seq
# -bsequence dna-align/RBAM_017030___baeS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03883___cypA-RBAM_017030___baeS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03883___cypA-RBAM_017030___baeS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03883___cypA
# 2: RBAM_017030___baeS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1415
# Identity: 759/1415 (53.6%)
# Similarity: 759/1415 (53.6%)
# Gaps: 385/1415 (27.2%)
# Score: 1606.5
#
#
#=======================================
BSNT_03883___ 1 ATGTCTTCAAAAGAAAAA--AATAGTGTAACC------------ATTTTG 36
||| |||||| ||| ||.|.||| |.|||.
RBAM_017030__ 1 ATG---------GAAAAAACAAT-GTTTCACCCACACTCACCCGAGTTTC 40
BSNT_03883___ 37 ACGGAAAGTCAATT---GTCTTCGAGAGC--ATTTAAAGATGAAG----- 76
|||.|||..|..|| ||.|| .||| |||.|.||| |.||
RBAM_017030__ 41 ACGAAAACCCTTTTGCGGTTTT---AAGCAGATTCAGAGA-GCAGGACCC 86
BSNT_03883___ 77 CGTATGAATTTTATAAA---GAATTGCGAAAATCACAGCCTCTCTACCCA 123
|.|| .||||| |||.|| ||||
RBAM_017030__ 87 CATA-------CATAAATTCGAACTG---------CAGC----------- 109
BSNT_03883___ 124 TTATCTTTAGGAG----CTCTGGGGAAAGGC-TGGCTCATATCGAGATAT 168
.|||.|||| ||.| ..||| ||||||||..||.|.|||
RBAM_017030__ 110 ----GTTTTGGAGGCACCTTT-----CCGGCTTGGCTCATCACGCGTTAT 150
BSNT_03883___ 169 GAAGA-TGCAATACATTTATTAAAGAATGAAAAATTA------AAGAAAA 211
||.|| ||.|...|.|||.|.|||||..|.|.||||| |.|.|||
RBAM_017030__ 151 GATGATTGTATGGCGTTTTTGAAAGACGGCAGAATTACGAGAGATGTAAA 200
BSNT_03883___ 212 AC----TATGAAAATGTATTTACCGCAAAAGAAAAACGTCCTGCTCTATT 257
|| .||| ||| ||.|..|||.|| ..
RBAM_017030__ 201 ACGGGTCATG------------CCG---------AAGGAGCTGATC--GC 227
BSNT_03883___ 258 GAAG---------AATGAAGA----------GTCTTTAACAAAGCATATG 288
|||| |.|||||| |||| ||.||||||||
RBAM_017030__ 228 GAAGCTGAATGTCAGTGAAGATATCGATTTTGTCT----CAGAGCATATG 273
BSNT_03883___ 289 CT---TAATTCAGATCCCCCTGATCA--CAACCG-CTTGCGAACTCTTGT 332
|| .|| |||.|||||.||||| || || ||| |||.||.|.||
RBAM_017030__ 274 CTGGCAAA---AGACCCCCCGGATCATTCA--CGACTT-CGATCTTTGGT 317
BSNT_03883___ 333 TCAAAAAGCATTTACGCATCGGATGATTTTCCAGTT--------GGA-AG 373
.||..|.|..||.||.|..|||||||||...|||.| ||| ||
RBAM_017030__ 318 GCATCAGGGGTTCACTCCCCGGATGATTGAGCAGCTTCGCACCGGGATAG 367
BSNT_03883___ 374 ACAAAATCCAGCATATCGCAGA-----TTCTTTATTGGATAAAGTGCAGC 418
||||.|||.|||| |.| |||||.||.||.|
RBAM_017030__ 368 ---------AGCAGATCACAGAAGAGCTGC-----TGGATGAAATGGA-- 401
BSNT_03883___ 419 CCAACAAATTCATGAACCTAGTAGACGATTATGCG---TTTC----CA-- 459
||||||..|| ||.|||..| ||.|||.| |||| ||
RBAM_017030__ 402 --AACAAAAGCA-GACCCTGAT-----ATCATGAGAGATTTCGCCGCACC 443
BSNT_03883___ 460 --TTGCCGATTATCGTGATAAGTGAAATGCTTGGCATTCCCTTGGAA--- 504
|| |||.|||||||.||....|||.||||.||.||||| |||
RBAM_017030__ 444 GCTT-CCGTTTATCGTCATTTCCGAACTGCTCGGGATTCC----GAAAGA 488
BSNT_03883___ 505 -GATCG-TCAAAAATTCAGAGTGTGGTCACAAGCAATTATTGATTTTTCA 552
||.|| .|.|||.|||| |||||||.||.|.|||||..|.||....|||
RBAM_017030__ 489 GGACCGCGCCAAATTTCA-AGTGTGGACAAACGCAATGGTCGACACGTCA 537
BSNT_03883___ 553 GATGCCCCTGAAAGACTTCAGGAGAA----TGACCA--CTTGTTAGG--- 593
||||| .|||.|| .||||| | |||
RBAM_017030__ 538 ---------GAAAG-----CGGACAAGATGCGACCAACC-----AGGCTC 568
BSNT_03883___ 594 ----AGAATTTGTTGAATATTTGGAATC-CTTAGTTCGCAAAAAAAGGAG 638
|||||||....|||||.||.||.| || |.|||.|.|||||.||
RBAM_017030__ 569 TCAAAGAATTTAAACAATATATGAAAACACT--GATCGAAGAAAAAAGA- 615
BSNT_03883___ 639 CGAACCTTCAGG----AGATTTAATCAGTGCA---TTAATTCAAGCGGAA 681
||.|.||.|| |||..|.| .|.||| || |||.|.||.|||
RBAM_017030__ 616 --AAACATCCGGGTGAAGACCTGA--CGAGCAAGCTT-ATTTACGCTGAA 660
BSNT_03883___ 682 -AGTGAAGGCACACAATTAAGTACAGAAGAATTGTACTCGATGATTATGC 730
|| ||.|||..|.||.|.|||..|..|||..||||.||.|||.|..|..
RBAM_017030__ 661 GAG-GACGGCCAAAAACTGAGTGAATCAGAGCTGTATTCCATGCTGTTTT 709
BSNT_03883___ 731 TGCTTA-TCGTTATAGGTCATGAAACAACCGTAAACTTAAT--------- 770
|| ||| |||||...||.|.|||||||||.||.|||.|..|
RBAM_017030__ 710 TG-TTAGTCGTTGCCGGGCTTGAAACAACGGTTAACCTTCTCGGCTCCGG 758
BSNT_03883___ 771 CACCAATATGACCTATGC-TCTGATGTGTCACGGTGATCAATTAGAAAAG 819
|||| .||.| || |||..|| |||...||.||..|.||.|||
RBAM_017030__ 759 CACC---CTGGC----GCTTCTTCTG---CACAAAGACCAGATGGAGAAG 798
BSNT_03883___ 820 CTCCGCCAGCAGCCAGACTTGATGAATTCA----GCCATAGAAGAAGCAT 865
.|....|.||||||.|| |...||||| ||..|.|||| ||| |
RBAM_017030__ 799 ATAAAGCGGCAGCCGGA----AAATATTCAGACGGCGGTCGAAG-AGC-T 842
BSNT_03883___ 866 TGTG-GTTTCACAGC-CCTGT--TGAGTTAACGACGATTCGCTGGACGGC 911
|.|| |||..||..| ||.|| |.| |.|.|.|.|.|||.|||.||..
RBAM_017030__ 843 TTTGCGTTATACCTCTCCCGTCATCA--TGATGGCAAATCGATGGGCGAT 890
BSNT_03883___ 912 TGAACCGTTT------------ATGCTGCATGGACAGGAGATTAAACGGA 949
|||| |.|| |||.|.| .|||||| |
RBAM_017030__ 891 TGAA--GATTTCACTTATAAAGATGTTTC----------TATTAAA---A 925
BSNT_03883___ 950 AA---GATGTGATCATCATTTCTTTAGCA-----TCAGCAAACCGTGATG 991
|| |||.|||| |||| .|..||| |||||.||.||.||..
RBAM_017030__ 926 AAGGCGATATGAT----ATTT-ATCGGCATCGGTTCAGCCAATCGGGACC 970
BSNT_03883___ 992 AGAAGATATTTCCA-AATGCCGACATATTTGATATTGAAAGAAAGAAC-- 1038
.|.| ||||||..| .||.|.||.|.|||..|||| ||..|||||
RBAM_017030__ 971 CGGA-ATATTTTGATGATCCTGATACATTAAATAT----AGCGAGAACAC 1015
BSNT_03883___ 1039 --AACCGCCATATTGCTTTTGGCCAT--GGCAATCATTTTTGCCTTGGTG 1084
|||||.|||||..||||||| || ||||.|||||||||.||.||.|
RBAM_017030__ 1016 CGAACCGTCATATCTCTTTTGG--ATTCGGCATTCATTTTTGTCTCGGGG 1063
BSNT_03883___ 1085 CACAGCTAGCCCGCTTAGAAGCAAAGATTGCGATTTCCACCTTATTACGC 1134
|.|.|||.|||||..|.||||||...||||| |.|||.|.|||
RBAM_017030__ 1064 CTCCGCTCGCCCGGATGGAAGCATCCATTGC--------CTTTACTGCGC 1105
BSNT_03883___ 1135 --------CGCTGTCCAAATATACAGTTAAAAGGCGAAAAGGAACAAATA 1176
||.|.|||.||||||.||.|.|||||||.....||..|..||
RBAM_017030__ 1106 TTTTAAAACGGTTTCCGAATATAGAGCTGAAAGGCGCGGCCGAGGATGTA 1155
BSNT_03883___ 1177 AAATGGAAAGGGAA--------TTTTCTGATGAGAGCACTCGAAGAACTG 1218
|.||||| ||| |||| ||||||..||.|||..|.||
RBAM_017030__ 1156 ACATGGA----GAAAAAATGTGTTTT----TGAGAGGGCTTGAAACATTG 1197
BSNT_03883___ 1219 CCGCTTAGTTTTTAA 1233
||..|.||.||||||
RBAM_017030__ 1198 CCTGTCAGATTTTAA 1212
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.