Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_02722 and RBAM_016620

See DNA alignment / Visit BSNT_02722 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:39
# Commandline: needle
#    -asequence pep-align/BSNT_02722___ymfA.1.9828.seq
#    -bsequence pep-align/RBAM_016620___ymfA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02722___ymfA-RBAM_016620___ymfA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02722___ymfA-RBAM_016620___ymfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02722___ymfA
# 2: RBAM_016620___ymfA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 555
# Identity:     520/555 (93.7%)
# Similarity:   541/555 (97.5%)
# Gaps:           0/555 ( 0.0%)
# Score: 2624.0
# 
#
#=======================================

BSNT_02722___      1 MKKKNTENVRIIALGGVGEIGKNLYVIEIDSDIFVVDAGLMHPENEMLGI     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_016620__      1 MKKKNTENVRIIALGGVGEIGKNLYVIEIDSDIFVVDAGLMHPENEMLGI     50

BSNT_02722___     51 DVVIPDISYLIERADRVKAIFLTHGHDENIGGVFYLLNKLSVPVYGTKLT    100
                     ||||||||||:|||||||||||||||||||||||||||||||||||||||
RBAM_016620__     51 DVVIPDISYLVERADRVKAIFLTHGHDENIGGVFYLLNKLSVPVYGTKLT    100

BSNT_02722___    101 LALLREKLKQYGHNRKTDLREIHSKSVITFESTKVSFFRTIHSIPDSVGV    150
                     ||||||||||||||||.||||:||||||||||||||||:|||||||||||
RBAM_016620__    101 LALLREKLKQYGHNRKADLREVHSKSVITFESTKVSFFKTIHSIPDSVGV    150

BSNT_02722___    151 SFKTSLGSIVCTGDFKFDQTPALNQTCDIGEIAKIGNSGVLALLSDSANA    200
                     ||||||||||||||||||||||.:|:||||||||||||||||||||||||
RBAM_016620__    151 SFKTSLGSIVCTGDFKFDQTPAYHQSCDIGEIAKIGNSGVLALLSDSANA    200

BSNT_02722___    201 ERPGYTPSEAAVSGEISDALYNSQNRVIIAVFASNINRIQQVIHAAAQNG    250
                     ||||||||||.|||||:||:.||:|||||||||||||||||||.||.|||
RBAM_016620__    201 ERPGYTPSEAYVSGEIADAMNNSENRVIIAVFASNINRIQQVIQAAVQNG    250

BSNT_02722___    251 RKIAVAGKNLQSVLQLARKLGYIEADDELFISVQDVKKYPKREVAIITAG    300
                     ||:|:||||||:||||.||||||||:||:||.||||||||||||||:|||
RBAM_016620__    251 RKLAIAGKNLQNVLQLGRKLGYIEAEDEMFIPVQDVKKYPKREVAIVTAG    300

BSNT_02722___    301 SQGEPLAALTRMANKAHKQLNIEEGDTVVIASTPIPGQELIYSKTVDLLA    350
                     |.|||||||||||.:||||||||||||||||||||||.||||||||:|||
RBAM_016620__    301 SHGEPLAALTRMAKQAHKQLNIEEGDTVVIASTPIPGHELIYSKTVNLLA    350

BSNT_02722___    351 RAGAQVIFAQKRVHVSGHGSQEELKLMINLLKPKYLIPVNGEYRMQKAHS    400
                     |||||||||||||||||||||||||||:||||||||||||||:|||||||
RBAM_016620__    351 RAGAQVIFAQKRVHVSGHGSQEELKLMLNLLKPKYLIPVNGEFRMQKAHS    400

BSNT_02722___    401 KIAEETGMKRSDIFLIEKGDVVEFRGQNVKIGDKVPYGNILIDGLGVGDI    450
                     |||||.|||||||||||||||||||||||||||||.|||:||||||||||
RBAM_016620__    401 KIAEEIGMKRSDIFLIEKGDVVEFRGQNVKIGDKVTYGNVLIDGLGVGDI    450

BSNT_02722___    451 GNIVLRDRRLLSQDGILIVVITLDKQKKHLVSGPEIITRGFVYVRESEGL    500
                     |||||||||||||||||||||:||||||:|||||||||||||||||||||
RBAM_016620__    451 GNIVLRDRRLLSQDGILIVVISLDKQKKNLVSGPEIITRGFVYVRESEGL    500

BSNT_02722___    501 IVQATELVRSIVTEATETSNVEWSTLKQAMRDALNQFLYEKTKRKPMIIP    550
                     |||||||||||||||||||.||||||||||||||||||||||||||||||
RBAM_016620__    501 IVQATELVRSIVTEATETSAVEWSTLKQAMRDALNQFLYEKTKRKPMIIP    550

BSNT_02722___    551 IIMEV    555
                     |||||
RBAM_016620__    551 IIMEV    555


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.