Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02722 and RBAM_016620

See Amino acid alignment / Visit BSNT_02722 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:40
# Commandline: needle
#    -asequence dna-align/BSNT_02722___ymfA.1.9828.seq
#    -bsequence dna-align/RBAM_016620___ymfA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02722___ymfA-RBAM_016620___ymfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02722___ymfA-RBAM_016620___ymfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02722___ymfA
# 2: RBAM_016620___ymfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1674
# Identity:    1360/1674 (81.2%)
# Similarity:  1360/1674 (81.2%)
# Gaps:          12/1674 ( 0.7%)
# Score: 5557.5
# 
#
#=======================================

BSNT_02722___      1 TTGAAAAAGAAAAATACAGAAAACGTTAGAATTATCGCCCTTGGCGGTGT     50
                     ||||||||||||||||||||||||||.||||||||||||||||||||.||
RBAM_016620__      1 TTGAAAAAGAAAAATACAGAAAACGTCAGAATTATCGCCCTTGGCGGCGT     50

BSNT_02722___     51 CGGAGAGATTGGGAAGAACCTTTATGTCATTGAAATTGACTCAGACATAT    100
                     ||||||.||||||||||||||.||||||||||||||||||||||||||||
RBAM_016620__     51 CGGAGAAATTGGGAAGAACCTATATGTCATTGAAATTGACTCAGACATAT    100

BSNT_02722___    101 TTGTCGTTGATGCCGGCCTTATGCATCCAGAAAACGAAATGCTCGGTATT    150
                     ||||.||.|||||.||.||.|||||.||.|||||.|||||||||||||||
RBAM_016620__    101 TTGTAGTGGATGCAGGGCTGATGCACCCTGAAAATGAAATGCTCGGTATT    150

BSNT_02722___    151 GATGTAGTGATTCCTGACATATCATATTTGATTGAACGGGCTGACCGCGT    200
                     |||||.||.|||||.||.||.||.||.||..|.|||||||||||||||||
RBAM_016620__    151 GATGTCGTCATTCCGGATATTTCCTACTTAGTAGAACGGGCTGACCGCGT    200

BSNT_02722___    201 CAAGGCAATCTTTTTAACGCACGGGCACGATGAAAATATCGGCGGCGTTT    250
                     .|||||.||||||.|.||.|||||||||||||||||.|||||.|||||.|
RBAM_016620__    201 GAAGGCCATCTTTCTGACACACGGGCACGATGAAAACATCGGGGGCGTCT    250

BSNT_02722___    251 TTTACTTATTAAACAAGCTGTCCGTTCCAGTGTACGGAACAAAACTGACG    300
                     ||||.|||||.||.||||||||.||.||.||.||||||||.||.||.|||
RBAM_016620__    251 TTTATTTATTGAATAAGCTGTCGGTGCCGGTATACGGAACGAAGCTTACG    300

BSNT_02722___    301 CTTGCACTGTTAAGAGAGAAATTAAAACAATACGGACATAACCGAAAAAC    350
                     ||||||.|..|.|||||.|||.|.||.||.|||||.|||||.||||||.|
RBAM_016620__    301 CTTGCATTACTGAGAGAAAAACTCAAGCAGTACGGGCATAATCGAAAAGC    350

BSNT_02722___    351 TGATTTAAGAGAAATTCACTCAAAATCTGTCATTACATTTGAATCAACAA    400
                     ||||||..|.|||.|||||||.|||||.||||||||||||||||||||.|
RBAM_016620__    351 TGATTTGCGTGAAGTTCACTCTAAATCAGTCATTACATTTGAATCAACGA    400

BSNT_02722___    401 AAGTATCGTTCTTTAGAACGATTCACAGCATTCCTGATTCTGTAGGTGTG    450
                     |||||||||||||||.||||||||||||.|||||.|||||.||.||.||.
RBAM_016620__    401 AAGTATCGTTCTTTAAAACGATTCACAGTATTCCGGATTCAGTGGGAGTC    450

BSNT_02722___    451 AGCTTTAAAACATCACTTGGATCTATTGTATGCACGGGAGACTTCAAATT    500
                     |||||.||||||||||||||.|||||||||||||||||||||||||||||
RBAM_016620__    451 AGCTTCAAAACATCACTTGGCTCTATTGTATGCACGGGAGACTTCAAATT    500

BSNT_02722___    501 TGACCAAACACCTGCACTT------AATCAGACGTGCGACATTGGCGAGA    544
                     ||||||.||.||||  |||      |||||    ||.||.||||||||.|
RBAM_016620__    501 TGACCAGACGCCTG--CTTATCACCAATCA----TGTGATATTGGCGAAA    544

BSNT_02722___    545 TCGCCAAGATCGGCAATAGCGGCGTGCTCGCTCTGCTTTCTGACAGTGCA    594
                     |.|||||.|||||.||.||||||||||||||.||||||||||||||.||.
RBAM_016620__    545 TTGCCAAAATCGGAAACAGCGGCGTGCTCGCCCTGCTTTCTGACAGCGCC    594

BSNT_02722___    595 AATGCGGAACGGCCGGGTTACACCCCTTCGGAAGCGGCTGTCAGCGGAGA    644
                     ||||||||.||.|||||.||.||.||.||.|||||...|||.|||||.||
RBAM_016620__    595 AATGCGGAGCGCCCGGGGTATACTCCGTCAGAAGCATATGTAAGCGGTGA    644

BSNT_02722___    645 AATTTCGGATGCGCTGTATAATTCACAGAACCGGGTGATTATTGCTGTTT    694
                     ||||.|.||||||.||.|.||||||.|.|||||.||.||.||||||||.|
RBAM_016620__    645 AATTGCCGATGCGATGAACAATTCAGAAAACCGTGTCATCATTGCTGTAT    694

BSNT_02722___    695 TCGCATCCAATATTAACCGGATTCAGCAAGTCATTCATGCAGCGGCTCAA    744
                     ||||.||.|||||.||||||||.||||||||.||.||.||.||.|..||.
RBAM_016620__    695 TCGCGTCTAATATCAACCGGATCCAGCAAGTGATACAGGCTGCCGTCCAG    744

BSNT_02722___    745 AATGGCAGAAAGATTGCCGTAGCCGGAAAAAATCTTCAATCTGTCCTGCA    794
                     ||.|||.|.||..||||..|.||||||||||||||.|||...||.||.||
RBAM_016620__    745 AACGGCCGCAAACTTGCAATCGCCGGAAAAAATCTGCAAAACGTGCTTCA    794

BSNT_02722___    795 GCTGGCGAGAAAGTTAGGATACATTGAAGCAGATGATGAATTGTTTATTT    844
                     |||||.|.|.|||.|.||.||.||||||||.||.||||||.||||||||.
RBAM_016620__    795 GCTGGGGCGCAAGCTCGGCTATATTGAAGCCGAAGATGAAATGTTTATTC    844

BSNT_02722___    845 CTGTACAGGATGTCAAAAAATATCCGAAGCGCGAAGTGGCCATTATTACA    894
                     ||||.||||||||.|||||||||||||||||.||||||||.|||.|||||
RBAM_016620__    845 CTGTGCAGGATGTGAAAAAATATCCGAAGCGGGAAGTGGCAATTGTTACA    894

BSNT_02722___    895 GCCGGAAGCCAAGGTGAACCATTAGCTGCTTTGACAAGAATGGCAAACAA    944
                     |||||||||||.|||||.||..|.||.|||.|.||..|.|||||.||..|
RBAM_016620__    895 GCCGGAAGCCATGGTGAGCCGCTGGCCGCTCTTACGCGGATGGCCAAGCA    944

BSNT_02722___    945 AGCTCACAAACAGCTGAACATTGAAGAAGGGGATACGGTGGTCATTGCGT    994
                     .||.|||||.|||||.||||||||||||||.||.||.||.||||||||.|
RBAM_016620__    945 GGCGCACAAGCAGCTTAACATTGAAGAAGGAGACACCGTTGTCATTGCAT    994

BSNT_02722___    995 CAACTCCGATTCCCGGGCAGGAACTCATTTACTCTAAAACAGTAGATCTT   1044
                     ||||.||||||||.|||||.|||.|.||.||.||.|||||.||..|.||.
RBAM_016620__    995 CAACACCGATTCCGGGGCATGAATTGATATATTCCAAAACCGTCAACCTG   1044

BSNT_02722___   1045 CTTGCGAGAGCCGGTGCACAAGTCATCTTTGCCCAAAAGCGTGTTCATGT   1094
                     |||||..|.|||||.||.||||||||.||.||||||||.||.||.|||||
RBAM_016620__   1045 CTTGCCCGCGCCGGCGCTCAAGTCATTTTCGCCCAAAAACGCGTGCATGT   1094

BSNT_02722___   1095 ATCAGGACACGGCTCACAAGAAGAGTTAAAGCTGATGATCAACCTGCTTA   1144
                     .||.||.|||||.||.||.|||||.||.||.||.|||.|.||..||||.|
RBAM_016620__   1095 GTCCGGGCACGGTTCGCAGGAAGAATTGAAACTCATGCTTAATTTGCTGA   1144

BSNT_02722___   1145 AACCAAAATATTTGATTCCTGTAAACGGCGAATACAGAATGCAAAAAGCT   1194
                     ||||.||||||||.|||||.||.|||||.||||.|||||||||||||||.
RBAM_016620__   1145 AACCGAAATATTTAATTCCGGTTAACGGTGAATTCAGAATGCAAAAAGCG   1194

BSNT_02722___   1195 CATTCAAAAATCGCTGAAGAAACCGGCATGAAGCGCAGTGACATCTTCTT   1244
                     |||||.||||||||.|||||.|.|||||||||.|||||.|||||.|||||
RBAM_016620__   1195 CATTCCAAAATCGCAGAAGAGATCGGCATGAAACGCAGCGACATTTTCTT   1244

BSNT_02722___   1245 AATTGAAAAAGGCGACGTCGTTGAATTCCGCGGCCAAAACGTAAAAATTG   1294
                     .|||||||||||.|||||||||||||||||||||||.||.||.|||||.|
RBAM_016620__   1245 GATTGAAAAAGGTGACGTCGTTGAATTCCGCGGCCAGAATGTGAAAATCG   1294

BSNT_02722___   1295 GGGATAAAGTTCCTTACGGCAATATTTTAATTGATGGTTTAGGTGTCGGT   1344
                     ||||||||||..|.|||||.||..|.||.|||||.||..|.||.|||||.
RBAM_016620__   1295 GGGATAAAGTCACGTACGGAAACGTGTTGATTGACGGCCTCGGAGTCGGC   1344

BSNT_02722___   1345 GATATCGGCAATATCGTATTGAGAGACCGCCGCTTGCTTTCACAGGACGG   1394
                     ||.||||||||.|||||..||||||||||||||||..|.|||||.|||||
RBAM_016620__   1345 GACATCGGCAACATCGTGCTGAGAGACCGCCGCTTATTGTCACAAGACGG   1394

BSNT_02722___   1395 AATTTTAATCGTTGTCATTACACTTGATAAACAAAAGAAACATCTTGTGT   1444
                     .|||.|.|||||.||.|||.||||.|||||.||.||.||..|.||.||.|
RBAM_016620__   1395 CATTCTCATCGTCGTAATTTCACTCGATAAGCAGAAAAAGAACCTCGTAT   1444

BSNT_02722___   1445 CAGGACCAGAAATTATCACTCGCGGCTTTGTTTATGTAAGAGAGTCTGAA   1494
                     ||||.||.||.||.||.||.|||||.||.||.|||||.|||||.||.|||
RBAM_016620__   1445 CAGGTCCTGAGATCATTACGCGCGGTTTCGTATATGTCAGAGAATCAGAA   1494

BSNT_02722___   1495 GGTCTAATCGTACAGGCTACTGAGCTCGTCCGGTCCATCGTGACAGAAGC   1544
                     |||.||||.|||||.|||||||||||||||||.||.|||||.||.|||||
RBAM_016620__   1495 GGTTTAATTGTACAAGCTACTGAGCTCGTCCGCTCTATCGTAACTGAAGC   1544

BSNT_02722___   1545 GACTGAAACATCAAATGTCGAATGGTCAACGCTGAAGCAGGCAATGCGGG   1594
                     |||.||||||||....||.||||||||.||||||||.||.||.|||||.|
RBAM_016620__   1545 GACGGAAACATCTGCCGTAGAATGGTCCACGCTGAAACAAGCCATGCGTG   1594

BSNT_02722___   1595 ATGCTTTGAACCAATTCCTTTATGAAAAAACGAAACGTAAACCGATGATC   1644
                     ||||..||||.||||||||||||||||||||.|||||.||.|||||||||
RBAM_016620__   1595 ATGCGCTGAATCAATTCCTTTATGAAAAAACAAAACGCAAGCCGATGATC   1644

BSNT_02722___   1645 ATCCCAATTATTATGGAAGTATAA   1668
                     ||.||.||.|||||||||||||||
RBAM_016620__   1645 ATTCCGATCATTATGGAAGTATAA   1668


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