Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02683 and RBAM_016310

See DNA alignment / Visit BSNT_02683 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:35
# Commandline: needle
#    -asequence pep-align/BSNT_02683___sigD.1.9828.seq
#    -bsequence pep-align/RBAM_016310___sigD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02683___sigD-RBAM_016310___sigD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02683___sigD-RBAM_016310___sigD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02683___sigD
# 2: RBAM_016310___sigD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 254
# Identity:     247/254 (97.2%)
# Similarity:   251/254 (98.8%)
# Gaps:           0/254 ( 0.0%)
# Score: 1261.0
# 
#
#=======================================

BSNT_02683___      1 MQSLNYEDQVLWTRWKEWKDPKAGDDLMRRYMPLVTYHVGRISVGLPKSV     50
                     ||||||||||||:|||||||||||||||||||||||||||||||||||||
RBAM_016310__      1 MQSLNYEDQVLWSRWKEWKDPKAGDDLMRRYMPLVTYHVGRISVGLPKSV     50

BSNT_02683___     51 HKDDLMSLGMLGLYDALEKFDPSRDLKFDTYASFRIRGAIIDGLRKEDWL    100
                     ||||||||||||||||||||||.|||||||||||||||||||||||||||
RBAM_016310__     51 HKDDLMSLGMLGLYDALEKFDPGRDLKFDTYASFRIRGAIIDGLRKEDWL    100

BSNT_02683___    101 PRTSREKTKKVEAAIEKLEQRYLRNVSPAEIAEELGMTVQDVVSTMNEGF    150
                     ||||||||||||||||||||||||||:|:|||||||||.|||||||||||
RBAM_016310__    101 PRTSREKTKKVEAAIEKLEQRYLRNVTPSEIAEELGMTEQDVVSTMNEGF    150

BSNT_02683___    151 FANLLSIDEKLHDQDDGENIQVMIRDDKNVPPEEKIMKDELIAQLAEKIH    200
                     ||||||||||||||||||||||||||||||||||||||||||||||.|||
RBAM_016310__    151 FANLLSIDEKLHDQDDGENIQVMIRDDKNVPPEEKIMKDELIAQLAGKIH    200

BSNT_02683___    201 ELSEKEQLVVSLFYKEELTLTEIGQVLNLSTSRISQIHSKALFKLKNLLE    250
                     ||||||||||||||||||||||||||||||||||||||||||||||:|||
RBAM_016310__    201 ELSEKEQLVVSLFYKEELTLTEIGQVLNLSTSRISQIHSKALFKLKHLLE    250

BSNT_02683___    251 KVIQ    254
                     ||||
RBAM_016310__    251 KVIQ    254


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