Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02683 and RBAM_016310

See Amino acid alignment / Visit BSNT_02683 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:35
# Commandline: needle
#    -asequence dna-align/BSNT_02683___sigD.1.9828.seq
#    -bsequence dna-align/RBAM_016310___sigD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02683___sigD-RBAM_016310___sigD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02683___sigD-RBAM_016310___sigD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02683___sigD
# 2: RBAM_016310___sigD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 765
# Identity:     666/765 (87.1%)
# Similarity:   666/765 (87.1%)
# Gaps:           0/765 ( 0.0%)
# Score: 2934.0
# 
#
#=======================================

BSNT_02683___      1 ATGCAATCCTTGAATTATGAAGATCAGGTGCTTTGGACGCGCTGGAAAGA     50
                     ||||||||||||||||||||||||||||||||||||.|||||||||||||
RBAM_016310__      1 ATGCAATCCTTGAATTATGAAGATCAGGTGCTTTGGTCGCGCTGGAAAGA     50

BSNT_02683___     51 GTGGAAAGATCCTAAAGCCGGTGACGACTTAATGCGCCGTTACATGCCGC    100
                     ||||||||||||||||||||||||.||.||||||||||||||||||||||
RBAM_016310__     51 GTGGAAAGATCCTAAAGCCGGTGATGATTTAATGCGCCGTTACATGCCGC    100

BSNT_02683___    101 TTGTCACATATCATGTAGGCAGAATTTCTGTCGGGCTGCCGAAATCAGTG    150
                     |.||||||||||||||.|||||||||||.|||||.|||||||||||.|||
RBAM_016310__    101 TGGTCACATATCATGTCGGCAGAATTTCCGTCGGACTGCCGAAATCGGTG    150

BSNT_02683___    151 CATAAAGACGATCTTATGAGCCTTGGTATGCTTGGTTTATATGATGCCCT    200
                     ||||||||||||||.|||||||||||||||||||||||||||||||||||
RBAM_016310__    151 CATAAAGACGATCTAATGAGCCTTGGTATGCTTGGTTTATATGATGCCCT    200

BSNT_02683___    201 TGAAAAATTTGACCCCAGCCGGGACTTAAAATTTGATACCTACGCCTCGT    250
                     .|||||||||||||||.|||||||.|||||||||||||||||.|||||||
RBAM_016310__    201 GGAAAAATTTGACCCCGGCCGGGATTTAAAATTTGATACCTATGCCTCGT    250

BSNT_02683___    251 TTAGAATTCGCGGCGCAATCATAGACGGGCTTCGTAAAGAAGATTGGCTG    300
                     |||||||||||||.||||||||.||||||||.||||||||||||||||||
RBAM_016310__    251 TTAGAATTCGCGGTGCAATCATCGACGGGCTGCGTAAAGAAGATTGGCTG    300

BSNT_02683___    301 CCCAGAACCTCGCGCGAAAAAACAAAAAAGGTTGAAGCAGCAATTGAAAA    350
                     ||||||||.||.||.||.||.||||||||.||.|||||.||.||.|||||
RBAM_016310__    301 CCCAGAACTTCACGGGAGAAGACAAAAAAAGTCGAAGCGGCGATCGAAAA    350

BSNT_02683___    351 GCTTGAACAGCGGTATCTTCGGAATGTATCGCCCGCGGAAATTGCAGAGG    400
                     .|||||||||||.||.|||||||||||..||||..|.||.||.|||||.|
RBAM_016310__    351 ACTTGAACAGCGCTACCTTCGGAATGTGACGCCTTCAGAGATCGCAGAAG    400

BSNT_02683___    401 AACTCGGAATGACGGTACAGGATGTCGTGTCAACAATGAATGAAGGTTTT    450
                     |.||.||.|||||||..|||||.||.||.|||||.|||||||||||||||
RBAM_016310__    401 AGCTGGGGATGACGGAGCAGGACGTAGTATCAACGATGAATGAAGGTTTT    450

BSNT_02683___    451 TTTGCAAATCTGCTGTCAATTGATGAAAAGCTCCATGATCAAGATGATGG    500
                     |||||.|||||..|.|||||||||||||||||.||.||.||.|||||.||
RBAM_016310__    451 TTTGCCAATCTCTTATCAATTGATGAAAAGCTTCACGACCAGGATGACGG    500

BSNT_02683___    501 GGAAAACATTCAAGTCATGATCAGAGATGACAAAAATGTTCCGCCTGAAG    550
                     .||.||.||||||||.|||||||||||||||||||||||.|||||.||||
RBAM_016310__    501 TGAGAATATTCAAGTGATGATCAGAGATGACAAAAATGTGCCGCCGGAAG    550

BSNT_02683___    551 AAAAGATTATGAAGGATGAACTGATTGCACAGCTTGCGGAAAAAATTCAC    600
                     ||||.||.||||||||.||.|||||.||.||||||||||..|||||||||
RBAM_016310__    551 AAAAAATCATGAAGGACGAGCTGATCGCTCAGCTTGCGGGCAAAATTCAC    600

BSNT_02683___    601 GAACTCTCTGAAAAAGAACAGCTGGTTGTCAGTTTGTTCTACAAAGAGGA    650
                     ||.||||||||||||||.|||||.||.||||||||.|||||.|||||.||
RBAM_016310__    601 GAGCTCTCTGAAAAAGAGCAGCTTGTCGTCAGTTTATTCTATAAAGAAGA    650

BSNT_02683___    651 GTTGACACTGACAGAAATCGGACAAGTATTAAATCTTTCTACGTCCCGCA    700
                     ..||||..||||.||.|||||||||||..|.||.|||||.|||||.||.|
RBAM_016310__    651 ACTGACTTTGACCGAGATCGGACAAGTCCTGAACCTTTCGACGTCGCGGA    700

BSNT_02683___    701 TATCTCAGATCCATTCAAAGGCATTATTTAAATTAAAGAATCTGCTGGAA    750
                     |.||.|||||.|||||||||||..|.||||||||||||.|||||||.|||
RBAM_016310__    701 TTTCACAGATTCATTCAAAGGCGCTGTTTAAATTAAAGCATCTGCTTGAA    750

BSNT_02683___    751 AAAGTGATACAATAA    765
                     |||||.||.||||||
RBAM_016310__    751 AAAGTAATTCAATAA    765


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