Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02603 and RBAM_015710

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:27
# Commandline: needle
#    -asequence pep-align/BSNT_02603___ylpC.1.9828.seq
#    -bsequence pep-align/RBAM_015710___fapR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02603___ylpC-RBAM_015710___fapR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02603___ylpC-RBAM_015710___fapR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02603___ylpC
# 2: RBAM_015710___fapR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 188
# Identity:     172/188 (91.5%)
# Similarity:   185/188 (98.4%)
# Gaps:           0/188 ( 0.0%)
# Score: 850.0
# 
#
#=======================================

BSNT_02603___      1 MRRNKRERQELLQQTIQATPFITDEELAGKFGVSIQTIRLDRLELSIPEL     50
                     |||:|:|||:||||||::||||||||||||||||||||||||||||||||
RBAM_015710__      1 MRRSKKERQKLLQQTIKSTPFITDEELAGKFGVSIQTIRLDRLELSIPEL     50

BSNT_02603___     51 RERIKNVAEKTLEDEVKSLSLDEVIGEIIDLELDDQAISILEIKQEHVFS    100
                     |||||||||:||:|||||||||||||||||||||.|||||||:::|||||
RBAM_015710__     51 RERIKNVAEQTLDDEVKSLSLDEVIGEIIDLELDGQAISILEVRREHVFS    100

BSNT_02603___    101 RNQIARGHHLFAQANSLAVAVIDDELALTASADIRFTRQVKQGERVVAKA    150
                     ||||||||||||||||||||||||||||||||:||||||||:||||||||
RBAM_015710__    101 RNQIARGHHLFAQANSLAVAVIDDELALTASANIRFTRQVKEGERVVAKA    150

BSNT_02603___    151 KVTAVEKEKGRTVVEVNSYVGEEIVFSGRFDMYRSKHS    188
                     |||||||||||||||||||||||:||||.|||||||.|
RBAM_015710__    151 KVTAVEKEKGRTVVEVNSYVGEEVVFSGSFDMYRSKQS    188


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