Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02603 and RBAM_015710

See Amino acid alignment / Visit BSNT_02603 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:27
# Commandline: needle
#    -asequence dna-align/BSNT_02603___ylpC.1.9828.seq
#    -bsequence dna-align/RBAM_015710___fapR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02603___ylpC-RBAM_015710___fapR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02603___ylpC-RBAM_015710___fapR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02603___ylpC
# 2: RBAM_015710___fapR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 568
# Identity:     467/568 (82.2%)
# Similarity:   467/568 (82.2%)
# Gaps:           2/568 ( 0.4%)
# Score: 1919.0
# 
#
#=======================================

BSNT_02603___      1 ATGAGAAGAAATAAGAGAGAACGCCAGGAATTACTTCAGCAGACGATTCA     50
                     ||||||||||..||||.|||||||||..|||||.|.|||||||||||..|
RBAM_015710__      1 ATGAGAAGAAGCAAGAAAGAACGCCAAAAATTATTGCAGCAGACGATCAA     50

BSNT_02603___     51 AGCAACCCCCTTTATTACAGATGAAGAATTAGCGGGTAAATTCGGGGTGA    100
                     |.|.||.|||||.||.||||||||||||||||||||.||||||||.||.|
RBAM_015710__     51 ATCGACACCCTTCATCACAGATGAAGAATTAGCGGGGAAATTCGGCGTCA    100

BSNT_02603___    101 GCATCCAGACGATACGTTTGGACCGCTTAGAGCTTTCCATACCTGAACTG    150
                     ||||.||||||||.|||||.||||||||||||||.||.|||||.||.|||
RBAM_015710__    101 GCATTCAGACGATCCGTTTAGACCGCTTAGAGCTCTCAATACCGGAGCTG    150

BSNT_02603___    151 AGAGAAAGAATTAAGAACGTGGCAGAGAAAACACTTGAGGACGAAGTGAA    200
                     ||.|||||||||||.|||||||||||..||||.|||||.||.||||||||
RBAM_015710__    151 AGGGAAAGAATTAAAAACGTGGCAGAACAAACGCTTGATGATGAAGTGAA    200

BSNT_02603___    201 GTCTCTGTCACTTGATGAAGTTATCGGAGAAATTATTGACCTTGAGCTGG    250
                     .||.|||||..|.||.|||||.|||||.|||||||||||.||.|||||.|
RBAM_015710__    201 ATCACTGTCTTTAGACGAAGTGATCGGTGAAATTATTGATCTGGAGCTTG    250

BSNT_02603___    251 ATGATCAGGCGATATCCATTTTAGAAATAAAACAGGAGCACGTGTTCAGC    300
                     |.|..|||||.||.|||||.||||||.|||.||..||.||.||.||||||
RBAM_015710__    251 ACGGCCAGGCCATTTCCATATTAGAAGTAAGACGCGAACATGTCTTCAGC    300

BSNT_02603___    301 CGGAATCAGATTGCGAGAGGACACCATTTATTTGCACAGGCGAATTCTTT    350
                     ||.|||||.||||||.|.||.||.|||||.|||||.||||||||.||..|
RBAM_015710__    301 CGCAATCAAATTGCGCGGGGGCATCATTTGTTTGCGCAGGCGAACTCACT    350

BSNT_02603___    351 GGCAGTTGCAGTCATTGATGACGAGCTGGCGCTGACTGCAAGTGCAGACA    400
                     .||.||.||.|||||||||||.||||||||||||||.|||||.|||.|.|
RBAM_015710__    351 CGCCGTAGCCGTCATTGATGATGAGCTGGCGCTGACCGCAAGCGCAAATA    400

BSNT_02603___    401 TCCGCTTTACAAGACAGGT-AAAGCAGGGTGAACGTGTCGTAGCAAAAGC    449
                     ||||||||||||||||||| |||| |.||.||.||.|||||.||.|||||
RBAM_015710__    401 TCCGCTTTACAAGACAGGTGAAAG-AAGGCGAGCGCGTCGTTGCGAAAGC    449

BSNT_02603___    450 GAAAGTGACGGCTGTCGAAAAAGAAAAAGGAAGAACGGTTGTCGAAGTGA    499
                     .|||||||||||.|||||||||||||||||.||||||||.||.|||||.|
RBAM_015710__    450 CAAAGTGACGGCAGTCGAAAAAGAAAAAGGCAGAACGGTAGTTGAAGTCA    499

BSNT_02603___    500 ACAGCTACGTTGGCGAAGAAATTGTTTTTTCTGGACGCTTTGACATGTAT    549
                     |||||||.||.||.||||||.|.||.||.||.||..|||||||||||||.
RBAM_015710__    500 ACAGCTATGTGGGAGAAGAAGTCGTGTTCTCCGGCAGCTTTGACATGTAC    549

BSNT_02603___    550 CGTTCAAAACATTCATAA    567
                     |||||||||||.||||||
RBAM_015710__    550 CGTTCAAAACAATCATAA    567


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