Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_02544 and RBAM_015240

See DNA alignment / Visit BSNT_02544 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:20
# Commandline: needle
#    -asequence pep-align/BSNT_02544___ylmH.1.9828.seq
#    -bsequence pep-align/RBAM_015240___ylmH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02544___ylmH-RBAM_015240___ylmH.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02544___ylmH-RBAM_015240___ylmH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02544___ylmH
# 2: RBAM_015240___ylmH
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 257
# Identity:     210/257 (81.7%)
# Similarity:   233/257 (90.7%)
# Gaps:           1/257 ( 0.4%)
# Score: 1078.0
# 
#
#=======================================

BSNT_02544___      1 MSDIYQHFRKDERAFIDQALEWKRIVQEQYRMKLTDFLDPREQVILSAVT     50
                     |||||||||:|||.|||||||||:||.:|||||||||||||||||:.||.
RBAM_015240__      1 MSDIYQHFRQDERPFIDQALEWKQIVLDQYRMKLTDFLDPREQVIVKAVI     50

BSNT_02544___     51 GQADVGLAFSGGYDRAERKRAILYPEYITPEVSDFELQAFNVCYADKFVS    100
                     |.| .||||.|||||||||||||||||:.||..||||:||:|.||:||||
RBAM_015240__     51 GDA-CGLAFFGGYDRAERKRAILYPEYMEPEQDDFELRAFDVQYAEKFVS     99

BSNT_02544___    101 VDHRSLLGALMGIGLKRQKFGDIVFSETAVQLIVSADTADFVAAQLTQAG    150
                     :|||||||:||||||||||:||::|||.|||||||.:.||||:.|||:||
RBAM_015240__    100 IDHRSLLGSLMGIGLKRQKYGDLIFSEEAVQLIVSGEIADFVSTQLTKAG    149

BSNT_02544___    151 KAAVSLEKIDLSDLNIPAVDVEIRDDTVSSLRLDAVCASMSRQSRQKSQT    200
                     ||.|.||||:||.|:|||.||||||||||||||||||||||||||||:|.
RBAM_015240__    150 KAPVKLEKIELSALHIPASDVEIRDDTVSSLRLDAVCASMSRQSRQKAQA    199

BSNT_02544___    201 LVKNGLVKVNWKVVEDPSYIVAEGDMLSIRGFGRCSLTKIEGKTKKDKWR    250
                     ||||||||||||.:|||||.|||||||||||||||||.|::||||||||:
RBAM_015240__    200 LVKNGLVKVNWKAIEDPSYQVAEGDMLSIRGFGRCSLAKVDGKTKKDKWK    249

BSNT_02544___    251 VTFERQK    257
                     |||||||
RBAM_015240__    250 VTFERQK    256


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.