Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02544 and RBAM_015240

See Amino acid alignment / Visit BSNT_02544 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:20
# Commandline: needle
#    -asequence dna-align/BSNT_02544___ylmH.1.9828.seq
#    -bsequence dna-align/RBAM_015240___ylmH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02544___ylmH-RBAM_015240___ylmH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02544___ylmH-RBAM_015240___ylmH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02544___ylmH
# 2: RBAM_015240___ylmH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 795
# Identity:     615/795 (77.4%)
# Similarity:   615/795 (77.4%)
# Gaps:          45/795 ( 5.7%)
# Score: 2275.5
# 
#
#=======================================

BSNT_02544___      1 ATGAGCGATATATATCAGCACTTCAGAAAAGACGAGCGGGCCTTTATTGA     50
                     |||||||||||.||.||||||||||||.|||||||||||.|.||||||||
RBAM_015240__      1 ATGAGCGATATTTACCAGCACTTCAGACAAGACGAGCGGCCTTTTATTGA     50

BSNT_02544___     51 TCAGGCGCTCGAATGGAAA-AGAATTGTCCAGGAGCAGTACCGGATGAAG     99
                     |||||||||.||||||||| || |||||||.|||.|||||.|||||||||
RBAM_015240__     51 TCAGGCGCTTGAATGGAAACAG-ATTGTCCTGGACCAGTATCGGATGAAG     99

BSNT_02544___    100 CTGACCGACTTTTTAGACCCCCGAGAGCAGGTCATCCTCTCT----GCTG    145
                     |||||.||.||.|||||.|||.||||.||||||||    |.|    ||.|
RBAM_015240__    100 CTGACTGATTTCTTAGATCCCAGAGAACAGGTCAT----TGTAAAAGCCG    145

BSNT_02544___    146 TTA-CGG-GACAGGCAGATGTCGGGCTTGCCTTTTCCGGCGGCTATGACA    193
                     ||| ||| ||| |.|.|    |||.|||||.||||.|||.||.|||||||
RBAM_015240__    146 TTATCGGCGAC-GCCTG----CGGTCTTGCGTTTTTCGGAGGATATGACA    190

BSNT_02544___    194 GAGCGGAGCGAAAACGGGCGATTCTGTATCCAGAGTACATTACTCCGGA-    242
                     ||||.|||||.|||||.||||||.|.||.||.||.||.||....||.|| 
RBAM_015240__    191 GAGCTGAGCGCAAACGCGCGATTTTATACCCTGAATATATGGAACCTGAA    240

BSNT_02544___    243 -AGTATCAGATTTTGAACTTCAGGCGTTTAACGTTTGTTATGCTGACAAG    291
                      ||.||  ||||||||.||||.|||.|||.|||||...||.|||||.||.
RBAM_015240__    241 CAGGAT--GATTTTGAGCTTCGGGCTTTTGACGTTCAATACGCTGAAAAA    288

BSNT_02544___    292 TTTGTCTCAG--TAGATCATCGTTCTCTGCTTGGTGCATTAATGGGCATA    339
                     ||.|  ||||  |.||.||.||.|||||.||.||..||||||||||.||.
RBAM_015240__    289 TTCG--TCAGCATTGACCACCGCTCTCTTCTCGGATCATTAATGGGGATC    336

BSNT_02544___    340 GGATTAAAGCGGCAAAAATTCGGTGACATCGTG-TTTTCT--GAGACAGC    386
                     ||.|||||||||||.||||.|||.|  ||| || ||||||  |||..|||
RBAM_015240__    337 GGCTTAAAGCGGCAGAAATACGGCG--ATC-TGATTTTCTCAGAGGAAGC    383

BSNT_02544___    387 AGTGCAATTGATTGTCTCAGCCGATACCGCTGATTTTGTGGCTGCA--CA    434
                     .|||||..||||.|||||.|..||.|.|||.||||||||  |.|||  ||
RBAM_015240__    384 CGTGCAGCTGATCGTCTCCGGTGAAATCGCCGATTTTGT--CAGCACTCA    431

BSNT_02544___    435 GCTGACCCAAGCAGGCAAAGCGGCGGTCAGCCTAGAGAAAATCGA-CTTG    483
                     |||||||.|.||.|||||||||.||||.|..||.||||||||||| ||| 
RBAM_015240__    432 GCTGACCAAGGCGGGCAAAGCGCCGGTAAAGCTTGAGAAAATCGAGCTT-    480

BSNT_02544___    484 TCAGACCTTAACATTCCAGCAGTT--GATGTCGAAATAAGAGATGACACG    531
                     ||.|..|||.|||||||.||  ||  ||||||||||||||.|||||||||
RBAM_015240__    481 TCCGCTCTTCACATTCCCGC--TTCAGATGTCGAAATAAGGGATGACACG    528

BSNT_02544___    532 GTTTCTTCTTTAAGGCTTGACGCCGTCTGCGCCTCTATGAGCAGGCAATC    581
                     ||||||||.||..|.||.||||||||||||||.||.||||||||||||||
RBAM_015240__    529 GTTTCTTCATTGCGTCTCGACGCCGTCTGCGCTTCAATGAGCAGGCAATC    578

BSNT_02544___    582 CCGCCAGAAATCACAGACGCTTGTGAAAAACGGCCTTGTGAAAGTGAACT    631
                     |||.||||||.|.|||.||||||||||||||||.||.||.||.|||||.|
RBAM_015240__    579 CCGGCAGAAAGCGCAGGCGCTTGTGAAAAACGGGCTCGTTAAGGTGAATT    628

BSNT_02544___    632 GGAAGGTGGTTGAAGATCCTTCATA-CATAGTCGCGGAAGGGGACATGCT    680
                     ||||.|...||||||||||.||.|| || .||.||.||||||||||||||
RBAM_015240__    629 GGAAAGCCATTGAAGATCCGTCTTATCA-GGTTGCTGAAGGGGACATGCT    677

BSNT_02544___    681 GTCAATCAGAGGTTTTGGCCGGTGCAGCTTAACAAAAATCGAAGGAAAAA    730
                     .||.||..|.||.||.||.||.|||||.||..|||||.|.||.|||||||
RBAM_015240__    678 CTCGATTCGCGGCTTCGGACGATGCAGTTTGGCAAAAGTTGACGGAAAAA    727

BSNT_02544___    731 CCAAAAAAGACAAATGGAGAGTTACGTTTGAACGACAAAAATAG-    774
                     |.||||||||||||||||.||||||.||||||||.||||||| | 
RBAM_015240__    728 CGAAAAAAGACAAATGGAAAGTTACATTTGAACGGCAAAAAT-GA    771


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02544 and RBAM_015240

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
