Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_02538 and RBAM_015200
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:20
# Commandline: needle
# -asequence pep-align/BSNT_02538___ylmD.1.9828.seq
# -bsequence pep-align/RBAM_015200___ylmD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_02538___ylmD-RBAM_015200___ylmD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02538___ylmD-RBAM_015200___ylmD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02538___ylmD
# 2: RBAM_015200___ylmD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 278
# Identity: 180/278 (64.7%)
# Similarity: 214/278 (77.0%)
# Gaps: 15/278 ( 5.4%)
# Score: 963.0
#
#
#=======================================
BSNT_02538___ 1 ---------------MIQDWAQTNQNNKEVIAGFTTKNGGVSQKPFESLN 35
||:||...||.|.:|||||||||||||..|:||||
RBAM_015200__ 1 MNTYHPFSLTTPSALMIEDWNCVNQLNTKVIAGFTTKNGGVSNPPYESLN 50
BSNT_02538___ 36 TGLHVHDKDADVVKNREYIADMFNTDLQSWVFADQTHDNRVQKVTQRDRG 85
|||||.|:..|||.|||.||.:..|||.|||||||||:|||::||..|:|
RBAM_015200__ 51 TGLHVRDEAHDVVTNREVIASLCGTDLDSWVFADQTHENRVRRVTAGDKG 100
BSNT_02538___ 86 KGAREYHTALKATDGLYTNEKNVFLALCFADCVPLFFYDPVKSLVGVAHA 135
||||:|.:|.:.||||||.:.|:||||||||||||:|||||||::|.|||
RBAM_015200__ 101 KGARDYSSAFRGTDGLYTKDANLFLALCFADCVPLYFYDPVKSIIGAAHA 150
BSNT_02538___ 136 GWKGTVKQIGREMVKQWTEKEGSNPSDIYAVIGPSISGACYTVDDRVMDA 185
|||||||||||.|.::|..:|||..:||.||||||||...|.|||||::.
RBAM_015200__ 151 GWKGTVKQIGRIMTERWVNEEGSRLTDIQAVIGPSISAGSYKVDDRVINE 200
BSNT_02538___ 186 VRALPVSADLAVNQTAKAQYQLDLKELNRLILMDSGLASEQISVSGLCTE 235
|||||.:|:.|:.:|.|.||||||||:|||:|:..|:..|.|||||||||
RBAM_015200__ 201 VRALPFTAESAICETEKGQYQLDLKEVNRLLLIHCGIPEENISVSGLCTE 250
BSNT_02538___ 236 SEPSLFYSHRRDQGKTGRMMSFIGMKEA 263
.|..||:|||||:|||||||||||:|||
RBAM_015200__ 251 RERELFFSHRRDKGKTGRMMSFIGLKEA 278
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