Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02538 and RBAM_015200

See Amino acid alignment / Visit BSNT_02538 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:20
# Commandline: needle
#    -asequence dna-align/BSNT_02538___ylmD.1.9828.seq
#    -bsequence dna-align/RBAM_015200___ylmD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02538___ylmD-RBAM_015200___ylmD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02538___ylmD-RBAM_015200___ylmD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02538___ylmD
# 2: RBAM_015200___ylmD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 886
# Identity:     586/886 (66.1%)
# Similarity:   586/886 (66.1%)
# Gaps:         143/886 (16.1%)
# Score: 1930.0
# 
#
#=======================================

BSNT_02538___      1 ---------------------------------------------ATGAT      5
                                                                  |||||
RBAM_015200__      1 ATGAATACATATCACCCGTTTAGTCTTACCACCCCCTCGGCACTCATGAT     50

BSNT_02538___      6 ACAAGACTGGGCTCAAAC-----GAATCAAAACAACAAAGAGGTCATTGC     50
                     |.||||||||     |||     ||||||....||||.|.|||||||.||
RBAM_015200__     51 AGAAGACTGG-----AACTGTGTGAATCAGCTTAACACAAAGGTCATCGC     95

BSNT_02538___     51 CGGATTTACGACAAAAAACGGCGGTGTCAGCCAAAAGCCT---TTTGAAT     97
                     ||||||.||.||.|||||||||||.||||||   ||.|||   |.|||.|
RBAM_015200__     96 CGGATTCACAACGAAAAACGGCGGGGTCAGC---AATCCTCCGTATGAGT    142

BSNT_02538___     98 CGTTAAATACAGGATTGCACGTTCATGACAAAGATGCA-GATGTAGTTAA    146
                     |.||||||||.|||||||||||.|..|||.|||.| || |||||.||.|.
RBAM_015200__    143 CATTAAATACCGGATTGCACGTCCGGGACGAAGCT-CATGATGTTGTGAC    191

BSNT_02538___    147 AAATCGTGAATATATTGCCGATATGT--TTA----ATACTGATTTGCAGT    190
                     |||.||||||...||.||      ||  |||    .|||||||.||.|.|
RBAM_015200__    192 AAACCGTGAAGTCATAGC------GTCCTTATGCGGTACTGATCTGGATT    235

BSNT_02538___    191 CTTGGGTATTCGCTGATCAGACACATGATAATCGCGTTCAGAAAGTGAC-    239
                     |.|||||.|||||.||.|||||||||||.||.|||||.|.|...||||| 
RBAM_015200__    236 CCTGGGTGTTCGCCGACCAGACACATGAAAACCGCGTCCGGCGCGTGACA    285

BSNT_02538___    240 GCAGAGGGATAGGGGAAAAGGCGCCCGTGAGTAT-------CACACGGCT    282
                     ||.| ||||||..||||||||.||..|.||.|||       ||..|.|| 
RBAM_015200__    286 GCCG-GGGATAAAGGAAAAGGAGCGAGAGACTATTCTTCCGCATTCCGC-    333

BSNT_02538___    283 CTAAAAGCAACGGACGGGCTCTATACAAATGAAAAA----AATGTATTTT    328
                           |..||||||||||||||.||    ||||.|    |||.|.||||
RBAM_015200__    334 ------GGGACGGACGGGCTCTACAC----GAAAGATGCGAATCTTTTTT    373

BSNT_02538___    329 TAGCATTATGCTTTGCTGATTGTGTGCCTCTT-TTCTTTTATGATCCGGT    377
                     |.||..|.||.|||||.||.|||||||| ||| |..||||||||.|||||
RBAM_015200__    374 TGGCCCTTTGTTTTGCGGACTGTGTGCC-CTTGTATTTTTATGACCCGGT    422

BSNT_02538___    378 TAAGTCGCTTGTCGGAGTCGCCCATGCCGGGTGGAAAGGCACCGTCAAAC    427
                     .||.||..||.||||.|..|||||||||||.|||||.||.||.|||||||
RBAM_015200__    423 GAAATCCATTATCGGCGCTGCCCATGCCGGATGGAAGGGGACGGTCAAAC    472

BSNT_02538___    428 AGATTGGCAGAGAAATGGTGAAGCAATGGACTGAG--AAGGAAG------    469
                     |.||   |.||...||..|||.|.||.|  |||.|  ||.||||      
RBAM_015200__    473 AAAT---CGGACGCATCATGACGGAACG--CTGGGTAAACGAAGAAGGCT    517

BSNT_02538___    470 ---GTTCAAATCCCTCAGATATTTACGCTGTTATTGGCCCGTCTATCAGC    516
                        |||.||      ||||||||.|.|||||.||.||.|||||.||||||
RBAM_015200__    518 CCCGTTTAA------CAGATATTCAGGCTGTCATCGGTCCGTCCATCAGC    561

BSNT_02538___    517 GGAGCATGCTATACGGTAGACGACCGCGTCATGGATGCTGTCCGCGCATT    566
                     |..|.|.||||||..||.|||||.||||||||..|||..||.||.||..|
RBAM_015200__    562 GCGGGAAGCTATAAAGTCGACGATCGCGTCATCAATGAAGTGCGGGCGCT    611

BSNT_02538___    567 GCCGGTTTCAGCAGA--CCTTGCCGTTAAT--CAGACGG-CAAAGGCACA    611
                     |||..||.|.||.||  ||  |||.|  ||  .|.|||| .|||||| ||
RBAM_015200__    612 GCCTTTTACGGCTGAATCC--GCCAT--ATGCGAAACGGAAAAAGGC-CA    656

BSNT_02538___    612 ATATCAGCTTGATCTGAAAGAGCTGAACCGTCTTATACTGATGGACA--G    659
                     .||.|||||||||.|.||||||.|.|||||||||.|.|||||  |||  |
RBAM_015200__    657 GTACCAGCTTGATTTAAAAGAGGTCAACCGTCTTCTTCTGAT--ACATTG    704

BSNT_02538___    660 CGG--TTTGGCAAGTGAACAAATTTCTGTCAGCGGTTTATGCACGGAAAG    707
                     |||  ||..|.||  |||.|.|||||.|||||||||||||||||.|||.|
RBAM_015200__    705 CGGCATTCCGGAA--GAAAACATTTCAGTCAGCGGTTTATGCACTGAACG    752

BSNT_02538___    708 CGAGCCGT-CTCTTTTCTATTCTCACCGCCGCGATCAGGGGAAAACTGGA    756
                     .||| ||| ..||.||||.|||.|||||||||||..|.||||||||.|||
RBAM_015200__    753 AGAG-CGTGAACTATTCTTTTCACACCGCCGCGACAAAGGGAAAACGGGA    801

BSNT_02538___    757 CGGATGATGTCCTTTATCGGAATGAAGGAGGCATAA    792
                     ||.||||||||||||||||||.||||||||||.|||
RBAM_015200__    802 CGCATGATGTCCTTTATCGGATTGAAGGAGGCGTAA    837


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02538 and RBAM_015200

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
