Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_02422 and RBAM_014290

See DNA alignment / Visit BSNT_02422 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:09
# Commandline: needle
#    -asequence pep-align/BSNT_02422___ykrA.1.9828.seq
#    -bsequence pep-align/RBAM_014290___ykrA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02422___ykrA-RBAM_014290___ykrA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02422___ykrA-RBAM_014290___ykrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02422___ykrA
# 2: RBAM_014290___ykrA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 257
# Identity:     203/257 (79.0%)
# Similarity:   226/257 (87.9%)
# Gaps:           0/257 ( 0.0%)
# Score: 1081.0
# 
#
#=======================================

BSNT_02422___      1 MDSKLIFFDIDGTIYDHDKNIPESTRKTVAELQRQGHHVFIASGRSPFLV     50
                     |:.||||||||||||||||:||:|.|..|..|:..|||||||||||||:|
RBAM_014290__      1 MNPKLIFFDIDGTIYDHDKHIPDSARNAVKALKEAGHHVFIASGRSPFMV     50

BSNT_02422___     51 KPILEELGIHSFISYNGQFVVFENQVIYKNPLPENAIRRLLKQADEGKHP    100
                     |||||||.|.||||||||:||||.:|||||||||:|:.||||||.||:||
RBAM_014290__     51 KPILEELEIESFISYNGQYVVFEGEVIYKNPLPEDAVARLLKQAAEGEHP    100

BSNT_02422___    101 VVFMAEDTMKATVADHPHVLEGIGSLKTDYPETDDLFYEGKEIFQLLLFC    150
                     ||||||||||.||..||||.|||||||..|||.|:.||:||||:||||||
RBAM_014290__    101 VVFMAEDTMKTTVPGHPHVSEGIGSLKAPYPEVDETFYKGKEIYQLLLFC    150

BSNT_02422___    151 QDEEEKAYAAFPEFDLVRWHELSTDVLPHGGSKAEGIKKVIERLPFDIGD    200
                     :..||||||||||||.||||||||||||.|||||||||:|:||||:.|.|
RBAM_014290__    151 RGHEEKAYAAFPEFDYVRWHELSTDVLPKGGSKAEGIKRVLERLPYGISD    200

BSNT_02422___    201 TYAFGDGLNDLQMIEYVGTGVAMGNAVPELKEIADFVTKPVDEDGIAYAA    250
                     |||||||||||:||.:|||||||||||||||..||||||||||:||::|.
RBAM_014290__    201 TYAFGDGLNDLEMIRFVGTGVAMGNAVPELKAAADFVTKPVDEEGISWAV    250

BSNT_02422___    251 KELGLLK    257
                     ||||||:
RBAM_014290__    251 KELGLLQ    257


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.