Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02422 and RBAM_014290

See Amino acid alignment / Visit BSNT_02422 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:09
# Commandline: needle
#    -asequence dna-align/BSNT_02422___ykrA.1.9828.seq
#    -bsequence dna-align/RBAM_014290___ykrA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02422___ykrA-RBAM_014290___ykrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02422___ykrA-RBAM_014290___ykrA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02422___ykrA
# 2: RBAM_014290___ykrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 781
# Identity:     596/781 (76.3%)
# Similarity:   596/781 (76.3%)
# Gaps:          14/781 ( 1.8%)
# Score: 2175.0
# 
#
#=======================================

BSNT_02422___      1 ATGGATTCTAAATTAATCTTTTTTGATATTGACGGCACAATATATGATCA     50
                     |||.||.|.|||.|.|||||||||||||||||||||||.||.|||||.||
RBAM_014290__      1 ATGAATCCAAAACTGATCTTTTTTGATATTGACGGCACGATCTATGACCA     50

BSNT_02422___     51 TGATAAGAATATACCGGAAAGTACGAGAAAAACCGTGGCGGAGC-TGCAG     99
                     ||||||..||||.||.||.||..|.|||||..|||||..||.|| |..||
RBAM_014290__     51 TGATAAACATATTCCCGATAGCGCAAGAAACGCCGTGAAGGCGCTTAAAG    100

BSNT_02422___    100 CGCCAAGGGCATCATGTGTTTATTGCCAGCGGCCGGTCTCCATTTTTGGT    149
                     .|.| .||.|||||.||.|||||.||||||||..||||.||.|||.||||
RBAM_014290__    101 AGGC-TGGCCATCACGTTTTTATCGCCAGCGGAAGGTCCCCGTTTATGGT    149

BSNT_02422___    150 TAAGCCGATTTTGGAGGAGCTGGGCATCCACTCATTTATTTCCTACAATG    199
                     .||.||||||.||||.|||||.|..||..|.|||||||||||.|||||.|
RBAM_014290__    150 AAAACCGATTCTGGAAGAGCTTGAGATTGAATCATTTATTTCATACAACG    199

BSNT_02422___    200 GACAGTTTGTTGTCTTTGAAAATCAAGTGATTTATAAAAATCCGCTGCCT    249
                     |.||||.|||.||.||||||..|.|.||.|||||||||||||||||.|||
RBAM_014290__    200 GCCAGTATGTCGTATTTGAAGGTGAGGTCATTTATAAAAATCCGCTTCCT    249

BSNT_02422___    250 GAAAATGCAATCAGGCGATTATTAAAGCAGGCGGATGAAGGCAAGCATCC    299
                     |||.||||..|...|||.||||||||||||||||..|||||..||||.||
RBAM_014290__    250 GAAGATGCGGTTGCGCGTTTATTAAAGCAGGCGGCAGAAGGGGAGCACCC    299

BSNT_02422___    300 TGTTGTGTTTATGGCTGAGGACACGATGAAAGCGACTGT-TGCGGATCAC    348
                     .||.||.||||||||.||.||||||||||||.||||.|| ..|||| ||.
RBAM_014290__    300 CGTCGTATTTATGGCGGAAGACACGATGAAAACGACCGTCCCCGGA-CAT    348

BSNT_02422___    349 CCCCATGTTCTC-GAGGGAATCGGCAGCCTTAAAACAGATTATCCAGAGA    397
                     ||.||.| |||| ||.|||||||||||.||.|||.|...||||||.||..
RBAM_014290__    349 CCGCACG-TCTCGGAAGGAATCGGCAGTCTGAAAGCGCCTTATCCCGAAG    397

BSNT_02422___    398 CCGATGACCTTTTTTATGAAGGAAAAGAAATTTTTCAGCTTCTTTTATTT    447
                     ..|||||....||||||.|||||||||||||||.||||||.||||||||.
RBAM_014290__    398 TTGATGAAACATTTTATAAAGGAAAAGAAATTTATCAGCTGCTTTTATTC    447

BSNT_02422___    448 TGTC-AGGATGAAGAAGAAAAAGCTTATGCCGCTTTTCCTGAGTTTGATC    496
                     ||.| .||| .|.|||||||||||.||||||||||||||.||||||||| 
RBAM_014290__    448 TGCCGCGGA-CATGAAGAAAAAGCATATGCCGCTTTTCCGGAGTTTGAT-    495

BSNT_02422___    497 TA-GTTCGCTGGCATGAGCTATCGACTGATGTTCTGCCGCACGGAGGTTC    545
                     || ||.|||||||||||..|.||.||.|||||.||.|||.|.||.|||||
RBAM_014290__    496 TACGTCCGCTGGCATGAATTGTCAACGGATGTGCTTCCGAAAGGCGGTTC    545

BSNT_02422___    546 GAAGGCAGAAGGAATCAAAAAAGTGATTGAGCGTCTTCCGTTTGATATCG    595
                     .||.||.|||||.||.||||.||||.|||||||.|||||||..|..||..
RBAM_014290__    546 AAAAGCGGAAGGCATTAAAAGAGTGCTTGAGCGGCTTCCGTACGGCATAA    595

BSNT_02422___    596 GCGATACATATGCTTTCGGCGACGGATTAAATGATCTGCAAATGATTGAA    645
                     |.||.||.|||||.||||||||||||.||||||||||..|.||||||...
RBAM_014290__    596 GTGACACTTATGCATTCGGCGACGGACTAAATGATCTTGAGATGATTCGT    645

BSNT_02422___    646 TATGTAGGGACAGGCGTTGCTATGGGAAATGCTGTTCCCGAACTGAAAGA    695
                     |.|||.||.||.||.||.||.|||||||||||.|||||.|||.|.||||.
RBAM_014290__    646 TTTGTCGGCACCGGGGTGGCGATGGGAAATGCGGTTCCGGAATTAAAAGC    695

BSNT_02422___    696 AATCGCGGACTTTGTAACAAAGCCGGTGGACGAGGATGGAATTGCA--TA    743
                     ...|||.||.||.||.||||||||||||||.|||||.|||||  ||  |.
RBAM_014290__    696 TGCCGCTGATTTCGTCACAAAGCCGGTGGATGAGGAAGGAAT--CAGCTG    743

BSNT_02422___    744 CGCTGCCAAAGAATTGGGCCTTTTAAAATAA    774
                     .||.|.|||||||.||||||||||..|||||
RBAM_014290__    744 GGCCGTCAAAGAACTGGGCCTTTTGCAATAA    774


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02422 and RBAM_014290

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
