Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02408 and RBAM_014180

See DNA alignment / Visit BSNT_02408 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:08
# Commandline: needle
#    -asequence pep-align/BSNT_02408___ykpB.1.9828.seq
#    -bsequence pep-align/RBAM_014180___ykpB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02408___ykpB-RBAM_014180___ykpB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02408___ykpB-RBAM_014180___ykpB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02408___ykpB
# 2: RBAM_014180___ykpB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 303
# Identity:     228/303 (75.2%)
# Similarity:   260/303 (85.8%)
# Gaps:           1/303 ( 0.3%)
# Score: 1185.0
# 
#
#=======================================

BSNT_02408___      1 MKFLVVGAGGVGGYIGGRLSEKGNDVTFLVRQKRAEQLKKTGLVIHSEKG     50
                     ||||||||||||||||.||:|||||||||||:||||||::|||.:.|.||
RBAM_014180__      1 MKFLVVGAGGVGGYIGARLAEKGNDVTFLVRKKRAEQLQETGLTVRSAKG     50

BSNT_02408___     51 NVSFQPELISAGETGQFDVVIIASKAYSLVQVIDDVKPFIHQESVILPFL    100
                     :||.:|:|:.|||.|.||.||||||||||..||.|||||:...|||:|||
RBAM_014180__     51 DVSIKPKLMMAGEEGAFDAVIIASKAYSLQDVIRDVKPFVKPSSVIIPFL    100

BSNT_02408___    101 NGYRHYEQLFAAFSKEQVLGGLCFIESALDNKGEIHHTSASHRFVFGEWN    150
                     ||||||.|||.||||.|||||||||||||::||:|.||||:|||||||||
RBAM_014180__    101 NGYRHYNQLFEAFSKRQVLGGLCFIESALNDKGDILHTSAAHRFVFGEWN    150

BSNT_02408___    151 GERTERIRAFEEAFSGVKAEVIISGHIEKDIWKKYLFIAAQAGITTLFQR    200
                     ||||||:...|.||:||||:||||..|||||||||:|||||||:|||||:
RBAM_014180__    151 GERTERMNELENAFAGVKADVIISRDIEKDIWKKYMFIAAQAGVTTLFQQ    200

BSNT_02408___    201 PLGPILATEAGRHTAQTLIGEICAVLRKEGVPADPDLEEESFRTMTSMSY    250
                     |:||||.||.||:||:.|..||.|:.:..|:|.||.|||||:||:|||||
RBAM_014180__    201 PVGPILETEGGRNTAKRLFAEIGAIFKAAGIPKDPGLEEESYRTLTSMSY    250

BSNT_02408___    251 HMKSSMLRDMENGQTTEGDHLHGFLLEKAKRLSLAAPVLETVYANLQMYE    300
                     |||||||||||.|:.|||||||||||||||.||:..||||||.|||||||
RBAM_014180__    251 HMKSSMLRDMEKGRVTEGDHLHGFLLEKAKGLSVDTPVLETVCANLQMYE    300

BSNT_02408___    301 AEK    303
                     |: 
RBAM_014180__    301 AK-    302


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