Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_02408 and RBAM_014180

See Amino acid alignment / Visit BSNT_02408 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:08
# Commandline: needle
#    -asequence dna-align/BSNT_02408___ykpB.1.9828.seq
#    -bsequence dna-align/RBAM_014180___ykpB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02408___ykpB-RBAM_014180___ykpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02408___ykpB-RBAM_014180___ykpB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02408___ykpB
# 2: RBAM_014180___ykpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 937
# Identity:     676/937 (72.1%)
# Similarity:   676/937 (72.1%)
# Gaps:          53/937 ( 5.7%)
# Score: 2331.5
# 
#
#=======================================

BSNT_02408___      1 ATGAAATTTTTGGTTGTCGGAGCAGGTGGAGTAGGTGGGTATATTGGCGG     50
                     |||||.|||||.|||||||||||.||.||||||||.||.|||||.||||.
RBAM_014180__      1 ATGAAGTTTTTAGTTGTCGGAGCTGGGGGAGTAGGCGGATATATCGGCGC     50

BSNT_02408___     51 ACGGCTTTCGGAGAAAGGAAATGATGTGACATTTCTTGTGCGCCAAAAAC    100
                     .||.|||.|.||.||.||.|||||.|||||.|||||.||.|||.|.||||
RBAM_014180__     51 GCGTCTTGCAGAAAAGGGGAATGACGTGACGTTTCTCGTCCGCAAGAAAC    100

BSNT_02408___    101 GAGCTGAGCAGCTGAAAAAAACCGGGCTTG-TCATCCATAGTGAAAAAGG    149
                     |.||.||.|| .|.|.||.||.||||.||| .|.||...||||.||||||
RBAM_014180__    101 GGGCGGAACA-ATTACAAGAAACGGGTTTGACCGTCAGAAGTGCAAAAGG    149

BSNT_02408___    150 GAATGTATCATTTCAGCCCGAACTAATCAGTGCCGGAGAAACAGG-GCAA    198
                     ..||||.|||.||.||||..||.||||.|..||.||.|||..||| || |
RBAM_014180__    150 TGATGTTTCAATTAAGCCGAAATTAATGATGGCGGGCGAAGAAGGAGC-A    198

BSNT_02408___    199 TTTGATGTCGTTATCATTGCTTCTAAAGCATACTCGCTTGTTC---AAGT    245
                     |||||.|..||||||||.|||||.|||||.||.||   |.|.|   |.||
RBAM_014180__    199 TTTGACGCGGTTATCATCGCTTCAAAAGCGTATTC---TTTGCAGGACGT    245

BSNT_02408___    246 GATAGACGATGTCAAACCATTT----ATCCATCAGGAATCTGTCATTCTC    291
                     .||....|||||||||||.|||    |.||.||    .||.||||||.|.
RBAM_014180__    246 CATTCGGGATGTCAAACCGTTTGTCAAACCTTC----GTCGGTCATTATT    291

BSNT_02408___    292 CCTTTTTTAAATGGGTACCGCCACTATGAGCAGCTATTTGCGGCATTTTC    341
                     |||||||||||.||.|||.|.||||||.|.|||||.||||..||.|||||
RBAM_014180__    292 CCTTTTTTAAACGGATACAGGCACTATAACCAGCTGTTTGAAGCTTTTTC    341

BSNT_02408___    342 AAAAGAACAGGTGCTGGGCGGCCTGTGTTTTATAGAAAGTG-CTTTAGAC    390
                     ||||...|||||||||||||||||.||.|||||.||.||.| |.||| ||
RBAM_014180__    342 AAAACGGCAGGTGCTGGGCGGCCTCTGCTTTATTGAGAGCGCCCTTA-AC    390

BSNT_02408___    391 AACAAAGGAGAAATTCATCATACGAGCGCATCGCATCGTTTTGTATTTGG    440
                     .|||||||.||.||||.||||||||||||..|.||.||.|||||.||.||
RBAM_014180__    391 GACAAAGGGGACATTCTTCATACGAGCGCTGCCCACCGCTTTGTTTTCGG    440

BSNT_02408___    441 AGAATGGAACGGCGAGCGTACGGAGCGGAT--AAGAGCGTTTGAAGAGGC    488
                     .|||||||||||.||.||.|||||.||.||  |.||||  |.|||.|.||
RBAM_014180__    441 TGAATGGAACGGGGAACGCACGGAACGTATGAATGAGC--TGGAAAACGC    488

BSNT_02408___    489 ATTTTCAGGTGTGAAGGCTGAAGTCATCATTAGCGGGCATATCGAGAAGG    538
                     ||||.||||||||||.||.||.||||||||.|||.||.||||.||.||||
RBAM_014180__    489 ATTTGCAGGTGTGAAAGCGGATGTCATCATCAGCCGGGATATTGAAAAGG    538

BSNT_02408___    539 ACATTTGGAAAAAGTATCTCTTTATTGCAGCGCAAGCGGGGATCACAACG    588
                     |||||||||||||.|||.|.||||||||.|||||.|||||..|.||.||.
RBAM_014180__    539 ACATTTGGAAAAAATATATGTTTATTGCCGCGCAGGCGGGAGTGACCACT    588

BSNT_02408___    589 TTATTTCAACGACCGCTTGGCCCAATCCTCGCCACAGAAGCCGGACGTCA    638
                     ||.|||||||..|||.|.||.||.||..|.|..|||||||.|||.||..|
RBAM_014180__    589 TTGTTTCAACAGCCGGTCGGACCGATTTTAGAAACAGAAGGCGGCCGCAA    638

BSNT_02408___    639 CACGGCCCAAA----CTCTTATTGGGGAAATTTGCGCTGTTTTACGAAAA    684
                     |||  |.||||    ||||  |||..|||||..|.||..||||       
RBAM_014180__    639 CAC--CGCAAAGCGCCTCT--TTGCTGAAATCGGAGCCATTTT-------    677

BSNT_02408___    685 GAAGG-TGTTCCGGC--------TGATCCGGATCTTGAGGAAGAGAGCTT    725
                     .|||| ||  |||||        .|||||.|.|||.||.||||||||.|.
RBAM_014180__    678 CAAGGCTG--CCGGCATCCCGAAAGATCCTGGTCTGGAAGAAGAGAGTTA    725

BSNT_02408___    726 TCGTACGATGACCAGCATGTCTTATCATATGAAGTCCTCCATGCTTCGGG    775
                     |||.||..||||.|||||||||||.||||||||.||.||.|||||..|.|
RBAM_014180__    726 TCGCACATTGACAAGCATGTCTTACCATATGAAATCGTCGATGCTGAGAG    775

BSNT_02408___    776 ATATGGAAAACGGCCAAACGACAGAAGGCGACCACCTGCATGGATTTTTG    825
                     ||||||||||.|||.....|||.|||||.||.||..|.||.|||||||||
RBAM_014180__    776 ATATGGAAAAGGGCAGGGTGACGGAAGGTGATCATTTACACGGATTTTTG    825

BSNT_02408___    826 CTTGAAAAAGCTAAACGTTTATCTCTCGCTGCACCAGTATTAGAAACCGT    875
                     |||||.|||||.|||.|.||.||..|.|.|.||||.||.||.||||||||
RBAM_014180__    826 CTTGAGAAAGCGAAAGGCTTGTCAGTTGATACACCTGTTTTGGAAACCGT    875

BSNT_02408___    876 TTATGCGAATCTGCAAATGTATGAAGCAGAAAAATAA    912
                     .|..||.||..||||||||||||||||   .||||||
RBAM_014180__    876 CTGCGCCAACTTGCAAATGTATGAAGC---GAAATAA    909


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02408 and RBAM_014180

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
