Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02406 and RBAM_014170

See DNA alignment / Visit BSNT_02406 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:07
# Commandline: needle
#    -asequence pep-align/BSNT_02406.1.9828.seq
#    -bsequence pep-align/RBAM_014170___ykpA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02406-RBAM_014170___ykpA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02406-RBAM_014170___ykpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02406
# 2: RBAM_014170___ykpA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 551
# Identity:     423/551 (76.8%)
# Similarity:   436/551 (79.1%)
# Gaps:         103/551 (18.7%)
# Score: 2160.5
# 
#
#=======================================

BSNT_02406         1 MIAVNNVSLRFADRKLFEDVNIKFTPGNCYGLIGANGAGKSTFLKVLSGE     50
                     |||||||||||||||||||||||||||||||||||||||||||||:||||
RBAM_014170__      1 MIAVNNVSLRFADRKLFEDVNIKFTPGNCYGLIGANGAGKSTFLKILSGE     50

BSNT_02406        51 IEPQTGDVHMSPGERLAVLKQNHFEYEEYEVLKVVIMGHKRLYEVMQEKD    100
                     :||||||||||||||||:|||||||||::|||||||||||||||||||||
RBAM_014170__     51 LEPQTGDVHMSPGERLAILKQNHFEYEDFEVLKVVIMGHKRLYEVMQEKD    100

BSNT_02406       101 AIYMKPDFSDEDGIRAAELEGEFAELNGWEAESEAAILLKGLGISEDLHT    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_014170__    101 AIYMKPDFSDEDGIRAAELEGEFAELNGWEAESEAAILLKGLGISEDLHT    150

BSNT_02406       151 KKMADLGGSEKVKVLLAQALFGKPDVLLLDEPTNHLDLQAIQWLEEFLIN    200
                     ||||||||||||||||||||||||||||||||||||||:|||||||||||
RBAM_014170__    151 KKMADLGGSEKVKVLLAQALFGKPDVLLLDEPTNHLDLKAIQWLEEFLIN    200

BSNT_02406       201 FENTVIVVSHDRHFLNKVCTHIADLDFNKIQIYVGNYDFWYESSQLALKL    250
                     |||||||||||||||||||||||||||||||:||||||||||||||||||
RBAM_014170__    201 FENTVIVVSHDRHFLNKVCTHIADLDFNKIQVYVGNYDFWYESSQLALKL    250

BSNT_02406       251 SQEANKKKEEQIKQLQEFVARFSANASKSKQATSRKKLLEKITLDDIKPS    300
                     |||||||||||||||||||||||||||||||||||||||:||||||||||
RBAM_014170__    251 SQEANKKKEEQIKQLQEFVARFSANASKSKQATSRKKLLDKITLDDIKPS    300

BSNT_02406       301 SRRYPYVNFTPEREIGNDVLRVEGLTKTIDGVKVLDNVSFIMNREDKIAF    350
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_014170__    301 SRRYPYVNFTPEREIGNDVLRVEGLTKTIDGVKVLDNVSFIMNREDKIAF    350

BSNT_02406       351 TGRNELAVTTLFKIISGEMEADSGTFKWGVTTSQAYFPKDNSEYFEGSDL    400
                     |||||||||||||||||||||||||||||||||||||||||||||:|||.
RBAM_014170__    351 TGRNELAVTTLFKIISGEMEADSGTFKWGVTTSQAYFPKDNSEYFDGSDA    400

BSNT_02406       401 NLVDWLRQYSPHDQSESFLRGFLDACCSLEKKSTKKQMYFPGE---KRSA    447
                     |||||||||||||||||||||||.            :|.|.||   |:|.
RBAM_014170__    401 NLVDWLRQYSPHDQSESFLRGFLG------------RMLFSGEEVNKKSN    438

BSNT_02406       448 VCC---RKRCFLAPIF----------------------------------    460
                     |..   :.||.|:...                                  
RBAM_014170__    439 VLSGGEKVRCMLSKAMLSGANILILDEPTNHLDLESITALNNGLISFKGA    488

BSNT_02406       460 --------------------------------------------------    460
                                                                       
RBAM_014170__    489 MLFSSHDHQFVQTIANRIIELTPKGIVDKQMSYDEFLENADVQKKLEELY    538

BSNT_02406       460 -    460
                      
RBAM_014170__    539 A    539


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