Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02406 and RBAM_014170
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:07
# Commandline: needle
# -asequence dna-align/BSNT_02406.1.9828.seq
# -bsequence dna-align/RBAM_014170___ykpA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02406-RBAM_014170___ykpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02406-RBAM_014170___ykpA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02406
# 2: RBAM_014170___ykpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1620
# Identity: 1176/1620 (72.6%)
# Similarity: 1176/1620 (72.6%)
# Gaps: 237/1620 (14.6%)
# Score: 5042.0
#
#
#=======================================
BSNT_02406 1 ATGATTGCTGTAAATAATGTAAGCTTGCGGTTTGCGGATCGCAAGTTATT 50
||||||||||||||||||||.||||||||.||||||||||||||||||||
RBAM_014170__ 1 ATGATTGCTGTAAATAATGTGAGCTTGCGTTTTGCGGATCGCAAGTTATT 50
BSNT_02406 51 TGAAGATGTTAATATTAAATTTACCCCAGGCAACTGCTATGGGTTAATTG 100
|||||||||.||||||||||||||.||.|||||||||||.||.|||||.|
RBAM_014170__ 51 TGAAGATGTCAATATTAAATTTACGCCGGGCAACTGCTACGGATTAATAG 100
BSNT_02406 101 GTGCAAACGGTGCCGGTAAATCAACGTTTCTAAAGGTGCTGTCAGGCGAA 150
|.||||||||||||||.||||||||.|||.|.||..|..|.||.||.||.
RBAM_014170__ 101 GCGCAAACGGTGCCGGAAAATCAACATTTTTGAAAATTTTATCCGGTGAG 150
BSNT_02406 151 ATCGAGCCTCAGACAGGCGACGTGCATATGAGTCCTGGCGAGCGTCTTGC 200
.|.|||||.|||||.|||||.||.||||||||.||.|||||.||||||||
RBAM_014170__ 151 CTGGAGCCGCAGACCGGCGATGTCCATATGAGCCCGGGCGAACGTCTTGC 200
BSNT_02406 201 CGTCTTGAAGCAGAACCATTTTGAGTACGAAGAGTATGAAGTGCTGAAAG 250
|.|..|||||||||||||.|||||.||.|||||.|..|||||||||||||
RBAM_014170__ 201 CATTCTGAAGCAGAACCACTTTGAATATGAAGACTTCGAAGTGCTGAAAG 250
BSNT_02406 251 TGGTCATTATGGGCCACAAACGCCTGTATGAAGTCATGCAGGAGAAAGAC 300
|.||.||||||||.||.|||||..|.||.||||||||||||||.||||||
RBAM_014170__ 251 TCGTTATTATGGGACATAAACGTTTATACGAAGTCATGCAGGAAAAAGAC 300
BSNT_02406 301 GCTATTTACATGAAGCCTGATTTCTCAGATGAGGATGGGATTCGTGCTGC 350
||.|||||.||||||||||||||.||||||||.||.||.||.||.||.||
RBAM_014170__ 301 GCGATTTATATGAAGCCTGATTTTTCAGATGAAGACGGCATCCGCGCCGC 350
BSNT_02406 351 TGAGCTAGAAGGTGAATTCGCGGAACTGAACGGTTGGGAAGCGGAAAGTG 400
||||||.|||||.||.||.||||||.|.|||||.||||||||.|||||||
RBAM_014170__ 351 TGAGCTTGAAGGAGAGTTTGCGGAATTAAACGGATGGGAAGCTGAAAGTG 400
BSNT_02406 401 AAGCTGCGATCCTGTTAAAAGGCCTTGGTATCTCAGAAGATCTGCACACA 450
||||.||.||..|||||||.|||||.||.|||||.|||||.|||||.||.
RBAM_014170__ 401 AAGCCGCTATTTTGTTAAAGGGCCTGGGCATCTCTGAAGACCTGCATACG 450
BSNT_02406 451 AAAAAGATGGCAGACCTCGGCGGTTCGGAGAAGGTAAAAGTTCTCTTGGC 500
||.||.|||||.|||.|.||||||||.||.|||||.|||||.||.|||||
RBAM_014170__ 451 AAGAAAATGGCTGACTTAGGCGGTTCAGAAAAGGTGAAAGTGCTTTTGGC 500
BSNT_02406 501 ACAGGCATTATTCGGCAAGCCGGATGTTCTGCTGCTCGATGAGCCGACGA 550
||||||..|.||||||||||||||.|||||.|||||.|||||.|||||.|
RBAM_014170__ 501 ACAGGCGCTGTTCGGCAAGCCGGACGTTCTTCTGCTTGATGAACCGACCA 550
BSNT_02406 551 ACCACTTGGACCTTCAGGCAATCCAGTGGCTTGAAGAGTTTCTGATTAAC 600
||||||||||.||..|.||.||.||||||||.|||||||||.|.||.|||
RBAM_014170__ 551 ACCACTTGGATCTGAAAGCGATTCAGTGGCTGGAAGAGTTTTTAATCAAC 600
BSNT_02406 601 TTTGAAAACACAGTTATTGTCGTATCCCATGACCGTCACTTCTTAAATAA 650
|||||.||||||||.||.|||||||||||||||||||||||.||||||||
RBAM_014170__ 601 TTTGAGAACACAGTCATCGTCGTATCCCATGACCGTCACTTTTTAAATAA 650
BSNT_02406 651 AGTATGTACGCACATTGCCGACCTTGATTTTAACAAAATTCAAATCTATG 700
|||.||.||||||||.|||||.|||||||||||.|||||||||.|.||.|
RBAM_014170__ 651 AGTGTGCACGCACATCGCCGATCTTGATTTTAATAAAATTCAAGTGTACG 700
BSNT_02406 701 TAGGAAACTATGATTTCTGGTACGAGTCAAGCCAGCTGGCGTTAAAGCTT 750
|.||.|||||||||||||||||.||.||.||||||||.||.|||||||||
RBAM_014170__ 701 TCGGCAACTATGATTTCTGGTATGAATCCAGCCAGCTTGCTTTAAAGCTT 750
BSNT_02406 751 TCTCAAGAAGCGAACAAGAAAAAAGAAGAGCAGATTAAACAGCTTCAAGA 800
|||||.|||||.|||||||||||||||||||||||||||||||||||.||
RBAM_014170__ 751 TCTCAGGAAGCCAACAAGAAAAAAGAAGAGCAGATTAAACAGCTTCAGGA 800
BSNT_02406 801 GTTTGTCGCTAGATTCAGCGCCAATGCGTCTAAATCTAAGCAGGCTACAT 850
|||.||.||.||||||||||||||.||.||||||||.||||||||.||||
RBAM_014170__ 801 GTTCGTGGCCAGATTCAGCGCCAACGCCTCTAAATCAAAGCAGGCGACAT 850
BSNT_02406 851 CAAGAAAGAAACTTCTCGAAAAAATCACGCTGGATGATATTAAACCGTCT 900
|||||||||||||.||.||.|||||||||||.||||||||.||||||||.
RBAM_014170__ 851 CAAGAAAGAAACTCCTTGATAAAATCACGCTTGATGATATCAAACCGTCA 900
BSNT_02406 901 TCCCGCCGCTATCCTTATGTTAACTTCACGCCGGAACGGGAAATCGGAAA 950
||.|||||.|||||||||||.||.||||||||||||||.||.||||||||
RBAM_014170__ 901 TCACGCCGTTATCCTTATGTCAATTTCACGCCGGAACGTGAGATCGGAAA 950
BSNT_02406 951 TGATGTTCTTCGCGTGGAAGGCTTAACAAAAACAATCGATGGCGTAAAGG 1000
|||.||.||.||.||.|||||||||||||||||.||.||.||.||.||||
RBAM_014170__ 951 TGACGTGCTGCGGGTTGAAGGCTTAACAAAAACGATTGACGGGGTTAAGG 1000
BSNT_02406 1001 TGCTTGACAATGTCAGCTTTATTATGAATCGAGAAGATAAAATTGCTTTC 1050
|||||||.||.|||||||||||||||||..|||||||||||||.|||||.
RBAM_014170__ 1001 TGCTTGATAACGTCAGCTTTATTATGAACAGAGAAGATAAAATCGCTTTT 1050
BSNT_02406 1051 ACTGGCCGAAATGAACTTGCTGTTACTACGCTGTTTAAAATCATTTCCGG 1100
||.|||||.||.||||||||.|||||.||..|||||||||||||||||||
RBAM_014170__ 1051 ACGGGCCGCAACGAACTTGCCGTTACGACATTGTTTAAAATCATTTCCGG 1100
BSNT_02406 1101 GGAAATGGAAGCTGACAGCGGAACGTTTAAATGGGGTGTTACCACATCTC 1150
||||||||||||.||||||||.||.|||||||||||.||.|||||.||.|
RBAM_014170__ 1101 GGAAATGGAAGCAGACAGCGGCACATTTAAATGGGGCGTGACCACTTCCC 1150
BSNT_02406 1151 AAGCGTATTTTCCAAAAGACAACAGCGAATATTTCGAAGGCAGTGATCTG 1200
|.|||||.||.||.||||||||||||||||||||.||.|||||.|||..|
RBAM_014170__ 1151 AGGCGTACTTCCCTAAAGACAACAGCGAATATTTTGACGGCAGCGATGCG 1200
BSNT_02406 1201 AACCTTGTAGACTGGCTTCGCCAATATTCTCCGCACGACCAAAGTGAGAG 1250
||||||||.||||||||.||||||||.||.|||||.||||||||.||.||
RBAM_014170__ 1201 AACCTTGTTGACTGGCTCCGCCAATACTCGCCGCATGACCAAAGCGAAAG 1250
BSNT_02406 1251 CTTTTTACGCGGTTTCTTA-GACGCATGCTGTTCTCTGGAGAAGAAGTCC 1299
||||.|.|||||||||||| ||||||||||||||||.||||||||||||.
RBAM_014170__ 1251 CTTTCTGCGCGGTTTCTTAGGACGCATGCTGTTCTCAGGAGAAGAAGTCA 1300
BSNT_02406 1300 ACAAAAAAGCAAATGTACTTTCCGGGGGAGAAAAGGTCCGCTGTATGCTG 1349
||||||||.||||.||.||||||||.||||||||.||.|||||.|||||.
RBAM_014170__ 1301 ACAAAAAATCAAACGTCCTTTCCGGAGGAGAAAAAGTGCGCTGCATGCTT 1350
BSNT_02406 1350 TCGAAAGCGATGCTTTCTGGCGCCAATATTTTAA---------------- 1383
||.||||||||||||||.|||||.||.|||||||
RBAM_014170__ 1351 TCAAAAGCGATGCTTTCCGGCGCGAACATTTTAATTCTGGATGAACCGAC 1400
BSNT_02406 1383 -------------------------------------------------- 1383
RBAM_014170__ 1401 AAACCACTTAGATTTGGAATCCATTACGGCGCTTAACAACGGCTTAATCA 1450
BSNT_02406 1383 -------------------------------------------------- 1383
RBAM_014170__ 1451 GCTTTAAAGGCGCTATGCTGTTCTCATCTCATGACCATCAGTTTGTACAG 1500
BSNT_02406 1383 -------------------------------------------------- 1383
RBAM_014170__ 1501 ACAATTGCCAACCGCATCATTGAATTAACGCCTAAAGGCATTGTTGACAA 1550
BSNT_02406 1383 -------------------------------------------------- 1383
RBAM_014170__ 1551 ACAAATGTCTTATGACGAATTTCTTGAAAACGCGGATGTACAGAAAAAGC 1600
BSNT_02406 1383 -------------------- 1383
RBAM_014170__ 1601 TTGAAGAGCTATACGCGTAA 1620
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