Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_02374 and RBAM_013990

See DNA alignment / Visit BSNT_02374 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:05
# Commandline: needle
#    -asequence pep-align/BSNT_02374___ykuV.1.9828.seq
#    -bsequence pep-align/RBAM_013990___ykuV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02374___ykuV-RBAM_013990___ykuV.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02374___ykuV-RBAM_013990___ykuV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02374___ykuV
# 2: RBAM_013990___ykuV
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 152
# Identity:     125/152 (82.2%)
# Similarity:   138/152 (90.8%)
# Gaps:           4/152 ( 2.6%)
# Score: 681.0
# 
#
#=======================================

BSNT_02374___      1 MKLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQ     50
                     |||||.||||||.|||:|.|||:|||:|.||.||||||.||.:||||||:
RBAM_013990__      1 MKLRQQMPELTGAKAWINREVTKEQLVGGKPALIHFWSASCRMCKEAMPE     50

BSNT_02374___     51 VNEFRDKYQDQLNVVAVHMPRSEDDLDLGKIKETAAEHDITQPIFVDSDH    100
                     :|||||||:|||||||||||||||||||.|||||||||||:|||:|||||
RBAM_013990__     51 MNEFRDKYKDQLNVVAVHMPRSEDDLDLEKIKETAAEHDISQPIYVDSDH    100

BSNT_02374___    101 ALTDSFENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLAETE--    148
                     .||::||||||||||:||||||||||||||||||||||||:|||.|||  
RBAM_013990__    101 TLTEAFENEYVPAYYLFDKTGQLRHFQAGGSGMKMLEKRVSRVLLETEQA    150

BSNT_02374___    148 --    148
                       
RBAM_013990__    151 SE    152


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.