Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02352 and RBAM_013830

See DNA alignment / Visit BSNT_02352 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:04
# Commandline: needle
#    -asequence pep-align/BSNT_02352___ykuD.1.9828.seq
#    -bsequence pep-align/RBAM_013830___ykuD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02352___ykuD-RBAM_013830___ykuD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02352___ykuD-RBAM_013830___ykuD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02352___ykuD
# 2: RBAM_013830___ykuD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 167
# Identity:     128/167 (76.6%)
# Similarity:   144/167 (86.2%)
# Gaps:           1/167 ( 0.6%)
# Score: 662.0
# 
#
#=======================================

BSNT_02352___      1 MRKLLTYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIPG     50
                      .||||||||||:|::|||.|||||||||||||||:|:.:.|||.|:||.
RBAM_013830__      1 -MKLLTYQVKQGETISSIAQDFRISTAALLQANPSIQSVIYAGQHIIIPN     49

BSNT_02352___     51 LPDPYTIPYHIAVSIGAKTLTLFLNNRVMKTYPIAVGKILTQTPTGEFYI    100
                     ||||.||||.|.|.||||.|.|:...|:::|||||||||||.||||||||
RBAM_013830__     50 LPDPSTIPYSIIVYIGAKKLELYRLGRLIRTYPIAVGKILTTTPTGEFYI     99

BSNT_02352___    101 INRQRNPGGPFGAYWLSLSKQHYGIHGTNNPASIGKAVSKGCIRMHNKDV    150
                     :|||..||||||||||||||.||||||||||:|||||||||||||:|:||
RBAM_013830__    100 VNRQPKPGGPFGAYWLSLSKIHYGIHGTNNPSSIGKAVSKGCIRMYNQDV    149

BSNT_02352___    151 IELASIVPNGTRVTINR    167
                     .|||:.|||||||||.|
RBAM_013830__    150 TELAATVPNGTRVTIIR    166


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