Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02352 and RBAM_013830
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:04
# Commandline: needle
# -asequence dna-align/BSNT_02352___ykuD.1.9828.seq
# -bsequence dna-align/RBAM_013830___ykuD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02352___ykuD-RBAM_013830___ykuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02352___ykuD-RBAM_013830___ykuD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02352___ykuD
# 2: RBAM_013830___ykuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 539
# Identity: 353/539 (65.5%)
# Similarity: 353/539 (65.5%)
# Gaps: 73/539 (13.5%)
# Score: 1128.5
#
#
#=======================================
BSNT_02352___ 1 ATGAGGAAACTGCTTACGTACCAGGTGAAGCAAGGTGATAC--ACTGAAC 48
|.|||||||||.||.||.||.|||||.|||||.||.|| .||.|
RBAM_013830__ 1 ---ATGAAACTGCTGACATATCAAGTGAAACAAGGAGAAACCATCTCA-- 45
BSNT_02352___ 49 AGCATCGCGGCTGATTTCAGAATCAGCACGGCTGCATTACTCCAGGCTAA 98
|||||.|||...||.||||||||.|||||.|||||..|.||.|||||.||
RBAM_013830__ 46 AGCATTGCGCAAGACTTCAGAATAAGCACTGCTGCTCTCCTTCAGGCAAA 95
BSNT_02352___ 99 TCCGTCACTGCAGGCAGGGCTCA---CCGCAGGACAGTCCATA--GTCAT 143
|||.|||.|.|| |..|.||| .|||.|||||| |||| .||||
RBAM_013830__ 96 TCCCTCAATCCA---ATCGGTCATATACGCGGGACAG--CATATTATCAT 140
BSNT_02352___ 144 CCCCGGA--CTGCCGGACCCTTATACAATTCCGTA--TCAT-ATCGCAGT 188
.|| || ||.||.|||||.|..||.|||||.|| .||| ||| ||
RBAM_013830__ 141 ACC--GAATCTTCCCGACCCATCCACCATTCCCTACTCCATCATC---GT 185
BSNT_02352___ 189 CTCAATCGGAGCGAAGA---------------CCCTT---ACGCTGTTCC 220
.|..||||||||||||| .|||| |.|||..|||
RBAM_013830__ 186 GTATATCGGAGCGAAGAAACTGGAGTTATACCGCCTTGGCAGGCTCATCC 235
BSNT_02352___ 221 TAAATAATCGGGTAATGAAAACCTATCCCATCGCCGTTGGTAAAATACTA 270
|| ||.||.||||||||.||.||.||||||.|.
RBAM_013830__ 236 -----------GT-------ACGTACCCCATCGCAGTCGGAAAAATATTG 267
BSNT_02352___ 271 ACGCAAACGCCTACTGGCGAGTTTTACATTATTAACCGCCAGCGCAATCC 320
|||...|||||.||.||.||.||||||||..|.||||||||||..||.||
RBAM_013830__ 268 ACGACCACGCCGACCGGAGAATTTTACATCGTGAACCGCCAGCCTAAGCC 317
BSNT_02352___ 321 CGGCGGCCCATTTGGCGCTTATTGGCTGAGCCTTTCAAAGCAGCACTACG 370
|||||||||.||.||||||||||||||.|||||.||.||....||.||||
RBAM_013830__ 318 CGGCGGCCCGTTCGGCGCTTATTGGCTCAGCCTCTCTAAAATTCATTACG 367
BSNT_02352___ 371 GAATACATGGGACGAATAATCCCGCTTCGATTGGTAAGGCTGTTTCTAAA 420
|.||.||.||.||.||||||||..|.||.||.||.||.||.||.||.|||
RBAM_013830__ 368 GCATTCACGGAACAAATAATCCTTCCTCCATCGGCAAAGCGGTATCAAAA 417
BSNT_02352___ 421 GGCTGCATTCGCATGCATAACAAAGACGTGATCGAACTTGCTTCAATTGT 470
||.|||||.||.|||.||||..|.|||||.|..||||||||..|.|..||
RBAM_013830__ 418 GGATGCATCCGGATGTATAATCAGGACGTCACTGAACTTGCCGCTACCGT 467
BSNT_02352___ 471 GCCAAACGGAACAAGAGTCACGATTAACCGGTAA----- 504
.||.||.||||||||.||.||.|||| |||
RBAM_013830__ 468 TCCTAATGGAACAAGGGTGACTATTA-----TAAGATAG 501
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