Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02339 and RBAM_013750

See DNA alignment / Visit BSNT_02339 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:03
# Commandline: needle
#    -asequence pep-align/BSNT_02339___ykwD.1.9828.seq
#    -bsequence pep-align/RBAM_013750___ykwD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02339___ykwD-RBAM_013750___ykwD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02339___ykwD-RBAM_013750___ykwD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02339___ykwD
# 2: RBAM_013750___ykwD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 263
# Identity:     176/263 (66.9%)
# Similarity:   200/263 (76.0%)
# Gaps:          25/263 ( 9.5%)
# Score: 871.0
# 
#
#=======================================

BSNT_02339___      1 MKKAFILSAAAAVGLFTFGGVQQASAKELSCQPVVTVKTGNTVQNMSLND     50
                     |||||:|||||||.|.||||:|||||||||||.|||||.|||||:::|.:
RBAM_013750__      1 MKKAFLLSAAAAVSLITFGGIQQASAKELSCQHVVTVKKGNTVQHLTLQE     50

BSNT_02339___     51 AVKKLHINTNIKTLNAANEKEIKQFLQKHAKQSNVKVQDVQKTETAKPAQ    100
                     ||:|||:.|::|.||..||||:.|.||||||.|::.|:||||...||.|.
RBAM_013750__     51 AVEKLHMRTSVKQLNVKNEKELTQLLQKHAKHSDMIVKDVQKETPAKTAP    100

BSNT_02339___    101 KTTEKAAADQNTASKAPATAEKTNTTTSA----PSSVSAYEKKVVELTNA    146
                     ...||..||||..::|...|::|:.|.::    |||||||||||||||||
RBAM_013750__    101 AAAEKPKADQNQQNQAADNAKQTDNTNNSSEKTPSSVSAYEKKVVELTNA    150

BSNT_02339___    147 ERQKQGLKPLQIDETLSKSARAKSQDMKDKNYFDHQSPTYGSPFDMMKSF    196
                     |||||||||||||:.|||||.|||||||||||||||||||||||||||||
RBAM_013750__    151 ERQKQGLKPLQIDDKLSKSAHAKSQDMKDKNYFDHQSPTYGSPFDMMKSF    200

BSNT_02339___    197 GISYKTAGENIAKGQKTPEEVVKAWMNSEGHRKNILNGSVILTV------    240
                     ||:||||||||||||.|||.|||||||||||||||:|..  .|.      
RBAM_013750__    201 GITYKTAGENIAKGQPTPEAVVKAWMNSEGHRKNIMNPE--FTQIGVGYV    248

BSNT_02339___    240 -------------    240
                                  
RBAM_013750__    249 ESGNIWTQQFIGK    261


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