Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02339 and RBAM_013750

See Amino acid alignment / Visit BSNT_02339 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:03
# Commandline: needle
#    -asequence dna-align/BSNT_02339___ykwD.1.9828.seq
#    -bsequence dna-align/RBAM_013750___ykwD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02339___ykwD-RBAM_013750___ykwD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02339___ykwD-RBAM_013750___ykwD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02339___ykwD
# 2: RBAM_013750___ykwD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 827
# Identity:     546/827 (66.0%)
# Similarity:   546/827 (66.0%)
# Gaps:         145/827 (17.5%)
# Score: 1943.0
# 
#
#=======================================

BSNT_02339___      1 ATGAAGAAAGCATTTATTTTATCTGCTGCCGCTGCGGTTGGATT-ATTCA     49
                     |||||.|||||||||.|.|||||||||||.||.||.||..|.|| ||| |
RBAM_013750__      1 ATGAAAAAAGCATTTCTCTTATCTGCTGCTGCGGCAGTCAGTTTGATT-A     49

BSNT_02339___     50 CATTCGGGGGCGTACAGCAAGCATCAGCGAAAGAACTCTCCTGCCAGCCT     99
                     |||||||.|||.|.|||||.|||||.||.|||||.||.||.|||||||..
RBAM_013750__     50 CATTCGGAGGCATTCAGCAGGCATCTGCCAAAGAGCTGTCATGCCAGCAC     99

BSNT_02339___    100 GTGGTTACAGTAAAAACGGGGAACACAGTACAAAACATGTCACTTAACGA    149
                     ||.|||||.|||||||..||.|||||.|||||..|..||.|.|||.|.||
RBAM_013750__    100 GTCGTTACCGTAAAAAAAGGAAACACTGTACAGCATCTGACTCTTCAAGA    149

BSNT_02339___    150 TGCAGTGAAAAAACTGCATATTAACAC-------AAATATCAAAACGTTA    192
                     .||.||..|||||||.|||||.|..||       |||.|.|..|||||||
RBAM_013750__    150 GGCTGTTGAAAAACTACATATGAGAACGAGCGTGAAACAGCTGAACGTTA    199

BSNT_02339___    193 AACGCTGCAAACGAAAAAGAGATTAAGCAGTTTCTTCAAAAACATGCGAA    242
                     |       |||.||.|||||..|.|..|||.|.||.||||||||.||.||
RBAM_013750__    200 A-------AAATGAGAAAGAACTGACTCAGCTGCTGCAAAAACACGCAAA    242

BSNT_02339___    243 GCAATCTAACGTGAAAGTTCAGGATGTTCAAAAGACAGAAACGGCCAAAC    292
                     |||.|||.|..|||.||||.|.||.||||||||   ||||||      ||
RBAM_013750__    243 GCATTCTGATATGATAGTTAAAGACGTTCAAAA---AGAAAC------AC    283

BSNT_02339___    293 CTGCACAAAAGACTACTGAAAAAGCAGCTGCTGATCAAAACACTGCTTCT    342
                     |.|||.|||.|.||.|      .|||||||||||  |||||       |.
RBAM_013750__    284 CGGCAAAAACGGCTCC------GGCAGCTGCTGA--AAAAC-------CG    318

BSNT_02339___    343 AAAGC--------ACCCGCAA-------CTGCTGAAAAAACA--------    369
                     |||||        |||.||||       |||||||.||..||        
RBAM_013750__    319 AAAGCCGATCAAAACCAGCAAAACCAGGCTGCTGACAATGCAAAGCAGAC    368

BSNT_02339___    370 ----AACAC-AACAACATCTG--------CACCTTCATCTGTAAGTGCAT    406
                         ||||| |||||||.|.|        |.|||||.|||||.|||||.|
RBAM_013750__    369 AGATAACACAAACAACAGCAGCGAGAAAACTCCTTCTTCTGTCAGTGCGT    418

BSNT_02339___    407 ACGAGAAAAAAGTTGTTGAACTTACAAATGCAGAAAGACAAAAACAAGGA    456
                     ||||.||.|||||.||||||.|.|||||||||||.||||||||.|||||.
RBAM_013750__    419 ACGAAAAGAAAGTCGTTGAATTGACAAATGCAGAGAGACAAAAGCAAGGT    468

BSNT_02339___    457 TTAAAGCCGCTTCAAATTGATG--AAACGTTAAGCAAATCTGCACGAGCA    504
                     |||||.||.||.||.|||||||  ||||  ||||||||||.||.|..|||
RBAM_013750__    469 TTAAAACCTCTGCAGATTGATGATAAAC--TAAGCAAATCCGCTCACGCA    516

BSNT_02339___    505 AAATCTCAGGATATGAAGGACAAAAACTACTTTGATCACCAAAGCCCAAC    554
                     |||||.||.||||||||.|||||||||||.||.||||||||||||||.||
RBAM_013750__    517 AAATCACAAGATATGAAAGACAAAAACTATTTCGATCACCAAAGCCCTAC    566

BSNT_02339___    555 ATACGGCTCACCGTTTGATATGATGAAATCTTTCGGAATCAGCTACAAAA    604
                     .|||||||||||.||.|||||||||||.|||||||||||||..||.||||
RBAM_013750__    567 TTACGGCTCACCTTTCGATATGATGAAGTCTTTCGGAATCACTTATAAAA    616

BSNT_02339___    605 CAGCAGGTGAAAACATTGCGAAGGGCCAAAAGACACCAGAAGAAGTAGTA    654
                     |.||.||||||||.||.||.||.||.||...|||.||.||||..||.||.
RBAM_013750__    617 CTGCTGGTGAAAATATCGCCAAAGGACAGCCGACTCCTGAAGCTGTCGTT    666

BSNT_02339___    655 AAAGCTTGGATGAACAGTGAAGGACACAGAAAAAACATTCT-AAACGGGA    703
                     |||||||||||||||||||||||.||||||||.|||||..| ||.|..||
RBAM_013750__    667 AAAGCTTGGATGAACAGTGAAGGCCACAGAAAGAACATCATGAATCCTGA    716

BSNT_02339___    704 GTGTAATATTAACT-------GTGT-----------AA------------    723
                     |       ||.|||       ||||           ||            
RBAM_013750__    717 G-------TTCACTCAAATCGGTGTCGGTTACGTAGAATCAGGAAACATC    759

BSNT_02339___    723 ---------------------------    723
                                                
RBAM_013750__    760 TGGACACAGCAATTTATCGGAAAATAA    786


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02339 and RBAM_013750

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
