Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02308 and RBAM_013510

See DNA alignment / Visit BSNT_02308 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:00
# Commandline: needle
#    -asequence pep-align/BSNT_02308___ykvL.1.9828.seq
#    -bsequence pep-align/RBAM_013510___ykvL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02308___ykvL-RBAM_013510___ykvL.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02308___ykvL-RBAM_013510___ykvL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02308___ykvL
# 2: RBAM_013510___ykvL
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 243
# Identity:     206/243 (84.8%)
# Similarity:   226/243 (93.0%)
# Gaps:           0/243 ( 0.0%)
# Score: 1105.0
# 
#
#=======================================

BSNT_02308___      1 MAKGIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDYSCSWCDSAFTWDGS     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_013510__      1 MAKGIPVLEIFGPTIQGEGMVIGQKTMFVRTAGCDYSCSWCDSAFTWDGS     50

BSNT_02308___     51 AKKDIRWMTAEEIFAELKDIGGDAFSHVTISGGNPALLKQLDVFIELLKE    100
                     |||||||||||:|:.||::|||||||||||||||||||||||..|.||||
RBAM_013510__     51 AKKDIRWMTAEDIYRELREIGGDAFSHVTISGGNPALLKQLDALILLLKE    100

BSNT_02308___    101 NNIRAALETQGTVYQDWFTLIDDLTISPKPPSSKMVTNFQKLDHILTSLQ    150
                     :.:||||||||||||||||:|:|||||||||||.|.|:|.|||||::||.
RBAM_013510__    101 HGVRAALETQGTVYQDWFTMINDLTISPKPPSSGMTTDFAKLDHIVSSLD    150

BSNT_02308___    151 ENDRQHAVSLKVVIFNDEDLEFAKMVHKRYPGIPFYLQVGNDDVHTTDDQ    200
                     ..:|.:||||||||||||||:|||.||||||.||||||||||:||||||:
RBAM_013510__    151 AAERLNAVSLKVVIFNDEDLQFAKTVHKRYPNIPFYLQVGNDNVHTTDDR    200

BSNT_02308___    201 SLITHLLGKYEALVDKVAVDAELNLVRVLPQLHTLLWGNKRGV    243
                     :||.|||||||.|||||:.|::|||||||||||||||||||||
RBAM_013510__    201 ALIAHLLGKYETLVDKVSADSDLNLVRVLPQLHTLLWGNKRGV    243


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