Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_02306 and RBAM_013490

See DNA alignment / Visit BSNT_02306 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:00
# Commandline: needle
#    -asequence pep-align/BSNT_02306___ykvJ.1.9828.seq
#    -bsequence pep-align/RBAM_013490___ykvJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02306___ykvJ-RBAM_013490___ykvJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02306___ykvJ-RBAM_013490___ykvJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02306___ykvJ
# 2: RBAM_013490___ykvJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 248
# Identity:     202/248 (81.5%)
# Similarity:   212/248 (85.5%)
# Gaps:          29/248 (11.7%)
# Score: 1086.0
# 
#
#=======================================

BSNT_02306___      1 -----------------------------MKKEKAIVVFSGGQDSTTCLL     21
                                                  ||||||:||||||||||||||
RBAM_013490__      1 MDTVFLCFLGRLLRKRRFFYGMIDKGEKDMKKEKAVVVFSGGQDSTTCLL     50

BSNT_02306___     22 WALKEFEEVETVTFHYNQRHSQEIEVAKSIAEKLGVKNHLLDMSLLNQLA     71
                     |||:.|||||||||||||||.:||:|||||||||||||||||||||||||
RBAM_013490__     51 WALQNFEEVETVTFHYNQRHQEEIDVAKSIAEKLGVKNHLLDMSLLNQLA    100

BSNT_02306___     72 PNALTRNDIEIEVKDGELPSTFVPGRNLVFLSFASILAFQIGARHIITGV    121
                     ||||||:|||||.||||||:||||||||||||||||||:|||||||||||
RBAM_013490__    101 PNALTRDDIEIEAKDGELPTTFVPGRNLVFLSFASILAYQIGARHIITGV    150

BSNT_02306___    122 CETDFSGYPDCRDEFVKSCNVTVNLAMEKPFVIHTPLMWLNKAETWKLVD    171
                     ||||||||||||||||||||||||||||||||||||||||||||||||.|
RBAM_013490__    151 CETDFSGYPDCRDEFVKSCNVTVNLAMEKPFVIHTPLMWLNKAETWKLAD    200

BSNT_02306___    172 ELGALEFVKNNTLTCYNGIIADGCGECPACHLRSKGYEEYMMMKGERA    219
                     |||||:||||||||||||||||||||||||.||:|||:|||.|||||.
RBAM_013490__    201 ELGALDFVKNNTLTCYNGIIADGCGECPACLLRNKGYDEYMKMKGERN    248


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.