Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02306 and RBAM_013490
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:00
# Commandline: needle
# -asequence dna-align/BSNT_02306___ykvJ.1.9828.seq
# -bsequence dna-align/RBAM_013490___ykvJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02306___ykvJ-RBAM_013490___ykvJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02306___ykvJ-RBAM_013490___ykvJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02306___ykvJ
# 2: RBAM_013490___ykvJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 752
# Identity: 541/752 (71.9%)
# Similarity: 541/752 (71.9%)
# Gaps: 97/752 (12.9%)
# Score: 2187.0
#
#
#=======================================
BSNT_02306___ 0 -------------------------------------------------- 0
RBAM_013490__ 1 TTGGATACGGTTTTTTTATGTTTTTTAGGGCGCCTTCTCCGAAAAAGGCG 50
BSNT_02306___ 1 -------------------------------------ATGAAAAAAGAAA 13
|||||||||||||
RBAM_013490__ 51 CTTTTTTTATGGAATGATAGATAAGGGAGAGAAAGACATGAAAAAAGAAA 100
BSNT_02306___ 14 AAGCAATTGTCGTATTTAGCGGCGGTCAAGACAGCACAACATGCTTATTG 63
|||||.||||.||.||.|||||.||.|||||||||||.||.||.|||||.
RBAM_013490__ 101 AAGCAGTTGTGGTGTTCAGCGGAGGCCAAGACAGCACGACTTGTTTATTA 150
BSNT_02306___ 64 TGGGCCTTAAAAGAATTCGAAGAAGTCGAAACGGTGACTTTTCATTATAA 113
|||||.||..||.|.||.||||||||.|||||.||.||.||.||||||||
RBAM_013490__ 151 TGGGCTTTGCAAAACTTTGAAGAAGTGGAAACCGTTACATTCCATTATAA 200
BSNT_02306___ 114 TCAGCGACATTCGCAG--GAAATTGAAGTGGCTAAATCCATTGCGGAAAA 161
||||||.|| |..|| |||||.||.|||||.|||||.|||||.|||||
RBAM_013490__ 201 TCAGCGTCA--CCAAGAAGAAATCGATGTGGCAAAATCGATTGCCGAAAA 248
BSNT_02306___ 162 GCTTGGTGTGAAAAATCATTTGCTTGATATGTCACTTTTAAATCAGCTTG 211
|||.|||||.||||||||.||||||||||||||.||||||||||||||.|
RBAM_013490__ 249 GCTCGGTGTCAAAAATCACTTGCTTGATATGTCTCTTTTAAATCAGCTCG 298
BSNT_02306___ 212 CACCGAATGCCCTGACAAGAAATGATATTGAGATAGAAGTAAAAGACGGA 261
|.||||||||.|||||||||.|||||||.||.||.||||..||.|||||.
RBAM_013490__ 299 CGCCGAATGCGCTGACAAGAGATGATATCGAAATTGAAGCGAAGGACGGG 348
BSNT_02306___ 262 GAACTGCCATCCACATTCGTCCCTGGCCGCAATTTGGTATTCTTATCCTT 311
||||||||..|.||.||.||.||.||.|||||..|.|||||.||||||||
RBAM_013490__ 349 GAACTGCCGACAACCTTTGTGCCGGGACGCAACCTTGTATTTTTATCCTT 398
BSNT_02306___ 312 TGCGTCTATCCTGGCTTTCCAAATTGGCGCGCGCCACATTATTACAGGAG 361
|||.||.||.||.||.|..|||||.|||||||||||||||||.||.||.|
RBAM_013490__ 399 TGCATCGATTCTTGCATATCAAATCGGCGCGCGCCACATTATCACCGGTG 448
BSNT_02306___ 362 TTTGCGAGACAGACTTCAGTGGTTATCCTGACTGCCGTGACGAATTCGTG 411
||||||||||.||.|||||.||.||.||.||||||||||||||.|||||.
RBAM_013490__ 449 TTTGCGAGACTGATTTCAGCGGCTACCCGGACTGCCGTGACGAGTTCGTC 498
BSNT_02306___ 412 AAATCTTGCAATGTCACGGTAAATCTGGCAATGGAGAAGCCGTTTGTGAT 461
|||||.|||||||||||.||.||.|||||.|||||.||||||||.||.||
RBAM_013490__ 499 AAATCCTGCAATGTCACCGTCAACCTGGCGATGGAAAAGCCGTTCGTCAT 548
BSNT_02306___ 462 CCACACGCCTCTCATGTGGCTCAATAAGGCGGAAACGTGGAAGCTTGTAG 511
.||.|||||.||.||||||||.||.||.||.|||||||||||.||||..|
RBAM_013490__ 549 TCATACGCCGCTTATGTGGCTGAACAAAGCAGAAACGTGGAAACTTGCTG 598
BSNT_02306___ 512 ATGAGCTTGGCGCGCTGGAGTTTGTAAAAAACAACACGCTGACATGCTAT 561
|||||||.||||||||.||.||||||||.||.|||||.|||||.||||||
RBAM_013490__ 599 ATGAGCTCGGCGCGCTTGATTTTGTAAAGAATAACACACTGACTTGCTAT 648
BSNT_02306___ 562 AACGGCATCATCGCCGACGGCTGCGGCGAATGTCCGGCATGTCACCTTCG 611
|||||||||||.||.|||||.|||||||||||.||||||||.|..||.||
RBAM_013490__ 649 AACGGCATCATTGCGGACGGATGCGGCGAATGCCCGGCATGCCTGCTCCG 698
BSNT_02306___ 612 TTCA--AAAGGTTATGAAGAATATATGATGATGAAAGGAGAGCGTGCA-T 658
|| |||||.|||||.||||||||||..|||||||||||||| |.| |
RBAM_013490__ 699 --CAATAAAGGATATGATGAATATATGAAAATGAAAGGAGAGCG-GAACT 745
BSNT_02306___ 659 AA 660
||
RBAM_013490__ 746 AA 747
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