Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_02253 and RBAM_013190

See DNA alignment / Visit BSNT_02253 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:56
# Commandline: needle
#    -asequence pep-align/BSNT_02253___ykoV.1.9828.seq
#    -bsequence pep-align/RBAM_013190___ykoV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02253___ykoV-RBAM_013190___ykoV.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02253___ykoV-RBAM_013190___ykoV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02253___ykoV
# 2: RBAM_013190___ykoV
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 294
# Identity:     240/294 (81.6%)
# Similarity:   269/294 (91.5%)
# Gaps:           1/294 ( 0.3%)
# Score: 1258.0
# 
#
#=======================================

BSNT_02253___      1 MHTMWKGSISFGLVNIPIKLYAATEDKDIKLRSLHKEDHAPIKYEKVCTN     50
                     |||||||||||||||||:||:|||||||||.|||||||||||||||:||.
RBAM_013190__      1 MHTMWKGSISFGLVNIPVKLFAATEDKDIKFRSLHKEDHAPIKYEKICTG     50

BSNT_02253___     51 CEKTLSPDEIVKGYEYVKGKYVVLTDEDLKSLKQEHEEKAVEIVDFVQLQ    100
                     |||:|.||||||||||||||||::||||||.:||||||||||||||||||
RBAM_013190__     51 CEKSLEPDEIVKGYEYVKGKYVIMTDEDLKDVKQEHEEKAVEIVDFVQLQ    100

BSNT_02253___    101 EIDPIYFNRSYFVGPGDNGTKAYTLLREALRSTGKIGIANMTIRSKQQLA    150
                     |||||||||||:|||||||||||||||||||:|||||||::|||||||||
RBAM_013190__    101 EIDPIYFNRSYYVGPGDNGTKAYTLLREALRTTGKIGIASITIRSKQQLA    150

BSNT_02253___    151 ILRVYENCIVMESIHYPDEVRSAAHVPGVPDQSNVNDKELQTAITLIDEL    200
                     |||||:|||||||||||||||:|.||||||:|:.||:||||||||||:||
RBAM_013190__    151 ILRVYDNCIVMESIHYPDEVRNAGHVPGVPEQTAVNEKELQTAITLINEL    200

BSNT_02253___    201 TAEFEPEKYEDTYRQALLQRVNDKLENKETAVTPDKAPPREDVIDLVSAL    250
                     |.||:||:||||||:|||.::|||||::|..|||..|.||||||||||||
RBAM_013190__    201 TTEFDPEQYEDTYRKALLAKINDKLEHEEAGVTPAAAGPREDVIDLVSAL    250

BSNT_02253___    251 QASIDRTRRPNRETPAAAPAQAAEPKGAGDKKRKTTRKKASGTS    294
                     |||||||:||:||..|.|..:.|...|.|.||:||||:|| |||
RBAM_013190__    251 QASIDRTKRPDREQAAPARTKDAASAGGGGKKQKTTRQKA-GTS    293


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.