Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_02251 and RBAM_013180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence pep-align/BSNT_02251___ligD.1.9828.seq
# -bsequence pep-align/RBAM_013180___ligD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_02251___ligD-RBAM_013180___ligD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02251___ligD-RBAM_013180___ligD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02251___ligD
# 2: RBAM_013180___ligD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 611
# Identity: 383/611 (62.7%)
# Similarity: 458/611 (75.0%)
# Gaps: 46/611 ( 7.5%)
# Score: 2073.0
#
#
#=======================================
BSNT_02251___ 1 ----------------------------------------------MELS 4
..|:
RBAM_013180__ 1 MVLTMQPILTSVPPEGSEWRYEVKYDGFRCLLRIDESGVTLTSRNGQTLT 50
BSNT_02251___ 5 STFPEITQFAKTAFQHLEKELPLTLDGEIVCLVNPCRADFEHLQVRGRLK 54
:.|||||.||...|||::...|:|||||:|.|:||.||||||||:|||||
RBAM_013180__ 51 NQFPEITAFAARCFQHMKDRFPITLDGELVYLINPYRADFEHLQIRGRLK 100
BSNT_02251___ 55 RPDKIQESANARPCCFLAFDLLERSGEDVTLLSYLDRKKSLRELISAAKL 104
|.:.|:.:|:.|||.|||||||...|.....|.|:.||::|.:|:..|.|
RBAM_013180__ 101 RTEAIESTADRRPCRFLAFDLLVLEGAGTVSLPYVKRKRALSKLLKEANL 150
BSNT_02251___ 105 PASPDPYAKETIQSIPCYDHFDQLWEMVIKYDGEGIVAKKTNSKWLEKKR 154
||.|...|:|.||.||.:..||.||:.|:::||||||||:.:|.|.|.||
RBAM_013180__ 151 PACPHHLAEEAIQYIPEHTDFDALWDKVVRHDGEGIVAKRASSGWAENKR 200
BSNT_02251___ 155 SSDWLKYKNFKQAYVCITGFNPNNGFLTVSVLKNGIMTPIASVSHGMRDE 204
|.||.|||:.|.|:|.:|||||.||::|.||||:|...|||||||||:.|
RBAM_013180__ 201 SPDWQKYKHMKTAHVLLTGFNPKNGYVTASVLKDGTAVPIASVSHGMQAE 250
BSNT_02251___ 205 EKSAIREIMEQHGHQTPSGEFKLEPSICAAVQYLTILHGTLREVSFIGFE 254
||:|:|.|||.||.:..|||:.||||||..|||||||..|||||||:.|:
RBAM_013180__ 251 EKNAVRTIMETHGKKQNSGEYTLEPSICMTVQYLTILQDTLREVSFVSFQ 300
BSNT_02251___ 255 FQMDWTECTYAQVIRHSKPVHPKLQFTSLDKIIFEKNKKTKEDFIQYMIE 304
|:||||||||.|:|.|||.:.|||||||||||:|:|.:|||.||:.||::
RBAM_013180__ 301 FEMDWTECTYQQLILHSKTLPPKLQFTSLDKIVFKKREKTKADFLSYMVK 350
BSNT_02251___ 305 VSDYLLPFLKNRAVTVIRYPHGSRSESFFQKNKPDYAPDFVQSFYDGSHE 354
:||:|:||||:|||||||||||:..|||||||||||.||||.|.:|||||
RBAM_013180__ 351 MSDFLMPFLKDRAVTVIRYPHGAPGESFFQKNKPDYTPDFVSSVFDGSHE 400
BSNT_02251___ 355 HIVCEDMSTLLWLCNQLALEFHVPFQTIKSRRPAEIVIDLDPPSRDDFLM 404
||||..:.:||||.|||||||||||||:.|.||||||||||||||:||.|
RBAM_013180__ 401 HIVCSSIPSLLWLANQLALEFHVPFQTVHSERPAEIVIDLDPPSRNDFPM 450
BSNT_02251___ 405 AVQAANELKRLLDSFGITSYPKLSGNKGIQLYIPLSPEAFTYEETRQFTQ 454
||:||:.||:|.|||.|||:||||||||||||||||||||||||||.||.
RBAM_013180__ 451 AVEAAHVLKQLFDSFSITSFPKLSGNKGIQLYIPLSPEAFTYEETRAFTM 500
BSNT_02251___ 455 LIAEYCTNAFPELFTTERLIKNRHGKLYLDYLQHAEGKTIICPYSTRGNE 504
|||:||....|:||||||.||||:|:|||||||||||||||.||||||||
RBAM_013180__ 501 LIADYCVRTRPDLFTTERFIKNRNGRLYLDYLQHAEGKTIIAPYSTRGNE 550
BSNT_02251___ 505 LGTVAAPLYWHEVQSSLTPALFTIDTVIDRIKKQGCPFFDFYRNPQDEPL 554
||||||||||.||.|||||..:|||||::|::.:|.||:||||||||.||
RBAM_013180__ 551 LGTVAAPLYWSEVNSSLTPDDYTIDTVVNRVRTEGDPFYDFYRNPQDGPL 600
BSNT_02251___ 555 SAILHQLKKKS 565
|.:|.|:|:||
RBAM_013180__ 601 SIVLEQIKRKS 611
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