Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02251 and RBAM_013180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_02251___ligD.1.9828.seq
# -bsequence dna-align/RBAM_013180___ligD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02251___ligD-RBAM_013180___ligD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02251___ligD-RBAM_013180___ligD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02251___ligD
# 2: RBAM_013180___ligD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1951
# Identity: 1187/1951 (60.8%)
# Similarity: 1187/1951 (60.8%)
# Gaps: 368/1951 (18.9%)
# Score: 3585.0
#
#
#=======================================
BSNT_02251___ 0 -------------------------------------------------- 0
RBAM_013180__ 1 ATGGTGCTGACGATGCAGCCGATTTTGACCTCTGTACCGCCTGAAGGCAG 50
BSNT_02251___ 0 -------------------------------------------------- 0
RBAM_013180__ 51 TGAGTGGCGCTATGAGGTAAAGTATGACGGATTCCGCTGTCTTCTCCGCA 100
BSNT_02251___ 1 ---------GTGGAGCT--------CAGCAGCACC--------------- 18
|.||.|.| ||||||.|.|
RBAM_013180__ 101 TAGACGAAAGCGGCGTTACATTAACCAGCAGAAACGGACAGACGCTGACG 150
BSNT_02251___ 19 ------TTCCCTGAAATCACACAATTCGCCAAAACTGCC------TTTCA 56
||.||.||||||||....||.| |.||| |||||
RBAM_013180__ 151 AATCAATTTCCGGAAATCACGGCTTTTG------CGGCCCGGTGTTTTCA 194
BSNT_02251___ 57 GCACCTAGAAAAAGAGCTTCCGC-TGACACTTGACGGTGAAATCGTATGT 105
||||.| ||||.|.||.||||.| |.||.||||||||.||..|.||.|.|
RBAM_013180__ 195 GCACAT-GAAAGACAGGTTCCCCATTACGCTTGACGGAGAGCTTGTCTAT 243
BSNT_02251___ 106 TTGGTGAATCCCTGTCGTGCAGATTTTGAACACCTTCAAGTGCGGGGGCG 155
||..|.|||||.|...|.||.||.|||||.||.||||||.|.||.||.||
RBAM_013180__ 244 TTAATCAATCCGTACAGAGCGGACTTTGAGCATCTTCAAATCCGCGGACG 293
BSNT_02251___ 156 TTTGAAAAGGCCAGACAAGATTCAGGAATCGGCAAA----CGC------G 195
|||.|||.||.|.|| ||.|||.| ||| ||| .
RBAM_013180__ 294 TTTAAAACGGACGGA--------AGCAATTG--AAAGCACCGCTGATAGA 333
BSNT_02251___ 196 CGGCCGTGCTGCTTTCTCGCCTTTGAT----TTGTTAGAGC--GAA-GCG 238
|||||||||.|||||||.||.|||||| |.||| | ||| |||
RBAM_013180__ 334 CGGCCGTGCCGCTTTCTGGCATTTGATCTCCTCGTT----CTGGAAGGCG 379
BSNT_02251___ 239 GAGAAGATGTAACGCTTCTTT--CGTATTTGGACCGCAAA---------- 276
..| |.|.||..||.|| |||||.||.|.||.|||
RBAM_013180__ 380 CCG-----GCACCGTCTCATTACCGTATGTGAAACGGAAACGCGCCCTTT 424
BSNT_02251___ 277 --AAATCGCTGCGTGAACTCATATCCGCAGCAAAGCTTCCTGCATCTCCA 324
||| ||||.|.|| |.||||||.|||||.||.|..||.
RBAM_013180__ 425 CCAAA---CTGCTTAAA---------GAAGCAAATCTTCCCGCCTGCCCT 462
BSNT_02251___ 325 GATC-CTTACGCAAAAGAAACCATTCAATCCATTCC--------CTGTTA 365
.||| |||| ||..|||||.|.|||||||.|||||| |||
RBAM_013180__ 463 CATCACTTA-GCGGAAGAAGCGATTCAATACATTCCGGAACACACTG--- 508
BSNT_02251___ 366 TGATCATTTTGATCAACTCTGGGAGATGGTAATAAAATATGACGGAGAAG 415
|.||||||...||.|||||.|.|||..|.....||||||||||||
RBAM_013180__ 509 -----ACTTTGATGCGCTTTGGGACAAGGTCGTCCGCCATGACGGAGAAG 553
BSNT_02251___ 416 GAATTGTAGCGAAGAAAACAAACAGCAAATGGCTT--------------G 451
|.||.|||||.| |||.||||| |
RBAM_013180__ 554 GTATCGTAGCAA--------------AAAGGGCTTCCAGCGGCTGGGCGG 589
BSNT_02251___ 452 AAAAGAAGCGGTCGTCCGATTGGCTCAAATATAAAAACTTTAAACAAGCT 501
||||.||.||.||..||||.||||..||.||||||.|..|.|||...||.
RBAM_013180__ 590 AAAATAAACGCTCTCCCGACTGGCAAAAGTATAAACATATGAAAACGGCA 639
BSNT_02251___ 502 TATGTTTGC--ATAACAGGGTTCAACCCTAACAACGGGTTTCTGACGGTA 549
.||| ||| .||||.|||||.||.||.||.|||||||.|.|.||||..
RBAM_013180__ 640 CATG--TGCTATTAACCGGGTTTAATCCGAAGAACGGGTATGTAACGGCC 687
BSNT_02251___ 550 TCGGTGTTAAAAAACGGAATAATGACA--------CCGATTGCCTCTGTC 591
||.||.||||||.|||| || |||||.||.||.||.
RBAM_013180__ 688 TCTGTTTTAAAAGACGG--------CACCGCCGTCCCGATCGCTTCCGTT 729
BSNT_02251___ 592 TCGCACGGAATGC--GCGATGAGGAAAAAAGCGCTATACGCGAG----AT 635
||.|||||.|||| ||| ||.|||||||.||| ||..|| ||
RBAM_013180__ 730 TCCCACGGCATGCAGGCG--GAAGAAAAAAACGC----CGTCAGAACCAT 773
BSNT_02251___ 636 TATGGA-ACAGCACGG------ACATCAAACACCCTCAGGCGAGTTTAAG 678
|||||| || .||||| ||| |||||.| |||||||.||..
RBAM_013180__ 774 TATGGAGAC-CCACGGAAAAAAACA--AAACAGC----GGCGAGTATACA 816
BSNT_02251___ 679 CTTGAACCTTCGATTTGTGCA--GCTGTTCAATACTTAACAATTCTCCAT 726
|||||.||||| |.|.|||| .|.|||||.||.|||||.||..|.||.
RBAM_013180__ 817 CTTGAGCCTTC--TATCTGCATGACCGTTCAGTATTTAACCATATTGCAG 864
BSNT_02251___ 727 GGCACATTAAGAGAGGTATCGTTTATCGGTTTCGAATTCCAAATGGACTG 776
|.|||..|..|.||.|||||.|||.|...|||..|.||..|||||||.||
RBAM_013180__ 865 GACACGCTGCGTGAAGTATCTTTTGTGTCTTTTCAGTTTGAAATGGATTG 914
BSNT_02251___ 777 GACCGAATGCACGTATGCGCAAGTCATACGACACTCCAAACCGGTTCACC 826
|||.||||||||||||..|||..|.||.|..|||||.|||.||.|.|..|
RBAM_013180__ 915 GACGGAATGCACGTATCAGCAGCTTATCCTTCACTCTAAAACGCTGCCGC 964
BSNT_02251___ 827 CAAAGCTCCAGTTCACAAGCCTGGATAAAATCATATTTGAAAAGAATAAA 876
|.|||||.||||||||||||||||||||.||..|.|||.||||...|.||
RBAM_013180__ 965 CGAAGCTGCAGTTCACAAGCCTGGATAAGATTGTTTTTAAAAAACGTGAA 1014
BSNT_02251___ 877 AAAACAAAAGAAGATTTTATTCAG-TATATGATTGAAGTCAGTGACTACC 925
|||||.||||.||| |||..|||| ||||||.|..||.|.||.||.|..|
RBAM_013180__ 1015 AAAACGAAAGCAGA-TTTCCTCAGTTATATGGTGAAAATGAGCGATTTTC 1063
BSNT_02251___ 926 TGCTCCCATTTCTGAAAAACCGGGCTGTCACCGTCATCCGCTATCCGCAT 975
|..|.||.|||||.|||.|.|||||.|||||.||.|||||.||||||||.
RBAM_013180__ 1064 TTATGCCCTTTCTTAAAGATCGGGCCGTCACGGTGATCCGTTATCCGCAC 1113
BSNT_02251___ 976 GGATCTAGGAGCGAATCATTTTTCCAAAAAAACAAACCGGACTATGCGCC 1025
||..|.....|||||||.|||||.||||||||||||||||||||..||||
RBAM_013180__ 1114 GGCGCGCCTGGCGAATCTTTTTTTCAAAAAAACAAACCGGACTACACGCC 1163
BSNT_02251___ 1026 GGATTTTGT-TCAATCTTTCTATGATGGAAGCCATGAACATATTGTCTG- 1073
|||.||||| ||||.| .|.|.|||.||.||||||||.||.||.||.||
RBAM_013180__ 1164 GGACTTTGTCTCAAGC-GTGTTTGACGGGAGCCATGAGCACATCGTATGC 1212
BSNT_02251___ 1074 -TGAGGATA-TGTCTACATTGCTATGGCTTTGC-AACCAGCTTGCTTTGG 1120
..||.||| .||| ||.|| |||||| |.|| ||.|||||.||..|.|
RBAM_013180__ 1213 AGCAGCATACCGTC-ACTTT--TATGGC-TGGCTAATCAGCTGGCGCTTG 1258
BSNT_02251___ 1121 AGTTTCACGTTCCTTTTCAAAC----CATT---AAAAGCAGGCGTCCGGC 1163
|.|||||||||||.|||||.|| |||| ||| |.||.||
RBAM_013180__ 1259 AATTTCACGTTCCGTTTCAGACAGTGCATTCTGAAA-------GGCCCGC 1301
BSNT_02251___ 1164 TGAGATTGTCATTGATTTAGACCCGCCTTCGCGAGATGACTTTCTTATGG 1213
.||.||.|||||||||.|.||.||.||.||..|..||||.||||.|||||
RBAM_013180__ 1302 AGAAATCGTCATTGATCTTGATCCTCCGTCAAGGAATGATTTTCCTATGG 1351
BSNT_02251___ 1214 CCGTGCAGGCCGCAAATGAACTGAAGCGGCTGTTGGATTCCTTTGGCATC 1263
|.|||.||||.||..|||..|||||.|.||||||.||.||.||..||||.
RBAM_013180__ 1352 CAGTGGAGGCTGCGCATGTGCTGAAACAGCTGTTTGACTCATTCAGCATT 1401
BSNT_02251___ 1264 ACATCGTACCCGAAGCTGTCCGGCAACAAAGGCATCCAGCTTTATATTCC 1313
||.||.|.|||||||||.|||||.||.||||||||.|||||.||.||.||
RBAM_013180__ 1402 ACGTCATTCCCGAAGCTCTCCGGAAATAAAGGCATTCAGCTCTACATCCC 1451
BSNT_02251___ 1314 -CTTGTCTCCCGAGGCATTTACGTATGAAGAAACACG-------CCAATT 1355
||| ||.||.||.|||||.||.|||||||||||.|| .||||
RBAM_013180__ 1452 GCTT-TCACCGGAAGCATTCACCTATGAAGAAACCCGTGCGTTCACAAT- 1499
BSNT_02251___ 1356 TACGCAGCTGATCGCAGAGTACTGCACCA--ATGCATTTCCCGAGCTCTT 1403
|||.|||||.||.||.|||..|| |.|| ..||.||.||.||
RBAM_013180__ 1500 ------GCTCATCGCCGATTATTGCGTCAGGACGC--GGCCGGATCTTTT 1541
BSNT_02251___ 1404 TACCACTGAACGCTTGATTAAAAACAGACACGGCAAATTGTATCTTGATT 1453
|||.||.||.||.||.||.||||||.||.||||||...|.||.||.||||
RBAM_013180__ 1542 TACGACAGAGCGGTTTATCAAAAACCGAAACGGCAGGCTCTACCTAGATT 1591
BSNT_02251___ 1454 ATTTGCAGCATGCAGAAGGAAAAACGATTATCTGTCCCTATTCGACGAGA 1503
|||||||||||||.|||||.|||||.||||||...|||||||||||..|.
RBAM_013180__ 1592 ATTTGCAGCATGCCGAAGGGAAAACCATTATCGCCCCCTATTCGACCCGG 1641
BSNT_02251___ 1504 GGAAATGAGCTTGGG-ACTGTTGCAGCCCCGCTCTACTGGCATGAGGTGC 1552
||.||.|| .||||| ||.|||||.||.||.||.||.|||...||.|| |
RBAM_013180__ 1642 GGCAACGA-ATTGGGAACGGTTGCGGCTCCCCTTTATTGGAGCGAAGT-C 1689
BSNT_02251___ 1553 AA-TCATCTTTAACACCCGCTCTGTTTACAATTGATACGGTCATCGATCG 1601
|| ||.|||||||||||||.|...|.|||.||.|||||.||..|..|.||
RBAM_013180__ 1690 AACTCCTCTTTAACACCCGATGATTATACGATCGATACAGTAGTGAACCG 1739
BSNT_02251___ 1602 AATTAAGA-AGCAGGGCTGCCCATTTTTTGATTTTTACCGCAACCCGCAA 1650
..|.|.|| || ||||....||.||||.||||||||||.|.||.|||||.
RBAM_013180__ 1740 CGTCAGGACAG-AGGGAGATCCGTTTTATGATTTTTACAGGAATCCGCAG 1788
BSNT_02251___ 1651 GACGAACCGCTTAGCGCCATATTGC---ATCAGTTGAAGAAAAAGAGCTG 1697
||||..|||||| .|.||..||| |.||..|.||||.|||||||||
RBAM_013180__ 1789 GACGGCCCGCTT---TCAATCGTGCTTGAGCAAATCAAGAGAAAGAGCTG 1835
BSNT_02251___ 1698 A 1698
|
RBAM_013180__ 1836 A 1836
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