Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02222 and RBAM_013060

See DNA alignment / Visit BSNT_02222 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:55
# Commandline: needle
#    -asequence pep-align/BSNT_02222___ykoB.1.9828.seq
#    -bsequence pep-align/RBAM_013060___ykoB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02222___ykoB-RBAM_013060___ykoB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02222___ykoB-RBAM_013060___ykoB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02222___ykoB
# 2: RBAM_013060___ykoB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 277
# Identity:     218/277 (78.7%)
# Similarity:   252/277 (91.0%)
# Gaps:           0/277 ( 0.0%)
# Score: 1156.0
# 
#
#=======================================

BSNT_02222___      1 MKLNEKLYAFFSEHVEQMAEEWIETMEESDPNSLYALHNATVTEELKEQD     50
                     ||::|.||.:|||.|:|:|:|||||||:|||||:|:|.|..:||||.|||
RBAM_013060__      1 MKISEALYNYFSEQVDQIAKEWIETMEDSDPNSIYSLTNPVITEELTEQD     50

BSNT_02222___     51 REFYRHLNYMYVLPEKQFLEEFQEWVIELTNDQKHLDTPVQYVIREFMRN    100
                     :|||||:|.||::|:|:|||||:.|||||..||||||||||||:||||||
RBAM_013060__     51 KEFYRHINKMYIMPKKEFLEEFERWVIELAKDQKHLDTPVQYVVREFMRN    100

BSNT_02222___    101 RRLYTKYFEKFAEENESAFEPGEKQKWADLIVKVFDFTIYTFVDHAEMNA    150
                     ||||..|::.||:::||:|..||::||.:|||:||||||||||||||.|:
RBAM_013060__    101 RRLYISYYDAFADKHESSFAQGERKKWENLIVQVFDFTIYTFVDHAEYNS    150

BSNT_02222___    151 KQQLNAQREMILELSSPVITLSKSTALLPLVGDIDTERAKFILENTLQAC    200
                     |.|||||||||||||||||||||.|||||||||||||||||||||||..|
RBAM_013060__    151 KMQLNAQREMILELSSPVITLSKRTALLPLVGDIDTERAKFILENTLSTC    200

BSNT_02222___    201 AKRRVEHLLIDLSGVVVVDTMVAHQIFKLIEALNLIGVRSTLSGIRPEIA    250
                     |||.:||||||||||||||||||||||||:|||.||||.|||||||||||
RBAM_013060__    201 AKRLIEHLLIDLSGVVVVDTMVAHQIFKLVEALKLIGVTSTLSGIRPEIA    250

BSNT_02222___    251 QTAVQLGIDFSNITIKTNLAQALNYHQ    277
                     ||||||||:||:||||:||||||||||
RBAM_013060__    251 QTAVQLGINFSDITIKSNLAQALNYHQ    277


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