Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02222 and RBAM_013060

See Amino acid alignment / Visit BSNT_02222 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:55
# Commandline: needle
#    -asequence dna-align/BSNT_02222___ykoB.1.9828.seq
#    -bsequence dna-align/RBAM_013060___ykoB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02222___ykoB-RBAM_013060___ykoB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02222___ykoB-RBAM_013060___ykoB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02222___ykoB
# 2: RBAM_013060___ykoB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 847
# Identity:     629/847 (74.3%)
# Similarity:   629/847 (74.3%)
# Gaps:          26/847 ( 3.1%)
# Score: 2212.0
# 
#
#=======================================

BSNT_02222___      1 ATGAAACTGAATGAAAAATTATATGCA--TTTTTTTCAGAGCATGTGGAA     48
                     |||||..|.|.||||..||||||  ||  |.|||||||||.||.|||||.
RBAM_013060__      1 ATGAAGATAAGTGAAGCATTATA--CAACTATTTTTCAGAACAAGTGGAT     48

BSNT_02222___     49 CAAATGGCCGAGGAATGGATTGAAACGATGGAGGAAAGTGATCCGAATTC     98
                     |||||.||..|.||.|||||.|||||||||||.||....|||||||||||
RBAM_013060__     49 CAAATTGCGAAAGAGTGGATCGAAACGATGGAAGATTCGGATCCGAATTC     98

BSNT_02222___     99 GCTTTACGCCCT-ACATAAT-GCAACAGTAACGGAAGAATTGAAAGAGCA    146
                     |.||||..|..| ||| ||| .|..|| |.||.||||||.|||..|||||
RBAM_013060__     99 GATTTATTCTTTGACA-AATCCCGTCA-TCACAGAAGAACTGACGGAGCA    146

BSNT_02222___    147 GGACAGAGAATTTTACCGGCATCTGAATTACATGTATGTTTTACCGGAAA    196
                     |||.|.||||||||||||||||.|.|||.|.||||||.|..|.|||.|||
RBAM_013060__    147 GGATAAAGAATTTTACCGGCATATTAATAAAATGTATATCATGCCGAAAA    196

BSNT_02222___    197 AACAATTTCTCGAAGAGTTTCAAGAGTGGGTCATAGAGCTGACCAACGAT    246
                     ||.|||||.|.|||||||||.|...||||||.||.|||||..|.||.||.
RBAM_013060__    197 AAGAATTTTTAGAAGAGTTTGAGCGGTGGGTGATTGAGCTTGCGAAAGAC    246

BSNT_02222___    247 CAAAAACATCTCGACACACCGGTTCAGTATGTCATTCGGGAGTTTATGAG    296
                     ||.||.|||||.||.||.||.||.||||||||..|.||.||.||.|||||
RBAM_013060__    247 CAGAAGCATCTGGATACTCCCGTCCAGTATGTGGTCCGTGAATTCATGAG    296

BSNT_02222___    297 AAACAGGAGATTATATACGAAGTATTTTGAGAAGTTCGCAGAAGAAAATG    346
                     ||||.|||||.||||.|..|..||||.|||...|||.||.||..||.|||
RBAM_013060__    297 AAACCGGAGACTATACATCAGTTATTATGATGCGTTTGCCGATAAACATG    346

BSNT_02222___    347 AGTCAGCGTTTGAACCGGGAGAGAAGCAA-AAATGGGCTGATTTGATTGT    395
                     |.||..||||||.||.|||||| |||.|| |||||||...||||.|||||
RBAM_013060__    347 AATCTTCGTTTGCACAGGGAGA-AAGGAAGAAATGGGAGAATTTAATTGT    395

BSNT_02222___    396 AAAAGTATTTGATTTCACCATATATACATTCGTTGATCACGCTGA-AATG    444
                     |.|||||||||||||.||.||.||.||.||.||.|||||.||.|| .||.
RBAM_013060__    396 ACAAGTATTTGATTTTACGATTTACACGTTTGTCGATCATGCCGAGTATA    445

BSNT_02222___    445 AATGCCAA----GCAGCAATTAAACGCCCAAAGAGAAATGATATTGGAAC    490
                     |.|  |||    |||||   |.||.||.||||||||||||||.|||||..
RBAM_013060__    446 ACT--CAAAAATGCAGC---TGAATGCGCAAAGAGAAATGATTTTGGAGT    490

BSNT_02222___    491 TAAGCTCACCTGTCATTACCCTGAGCAAATCAACAGCTCTGCTGCCCCTT    540
                     |||||||.||.||.||.||.|||||||||...||.||.||||||||.|||
RBAM_013060__    491 TAAGCTCGCCGGTTATCACGCTGAGCAAACGGACGGCGCTGCTGCCGCTT    540

BSNT_02222___    541 GTCGGTGACATTGATACCGAACGGGCGAAGTTTATTCTGGAAAACACGCT    590
                     |||||.||.|||||.||.||.||.||.||.||.|||||.|||||.|||||
RBAM_013060__    541 GTCGGCGATATTGACACGGAGCGCGCCAAATTCATTCTTGAAAATACGCT    590

BSNT_02222___    591 TCAAG--CTTGTGCGAAAAGACGTG-TGGAGCATCTGTTAATCGATCTGT    637
                       .||  |.|||||.|||.|.| || |.||.|||||||||||.||.||||
RBAM_013060__    591 --GAGCACATGTGCAAAACGGC-TGATTGAACATCTGTTAATTGACCTGT    637

BSNT_02222___    638 CAGGTGTTGTTGTGGTGGATACGATGGTGGCGCACCAGATCTTTAAATTG    687
                     |.|||||.||.||.||.|||||||||||||||||.|||||.||||||||.
RBAM_013060__    638 CGGGTGTAGTGGTTGTCGATACGATGGTGGCGCATCAGATTTTTAAATTA    687

BSNT_02222___    688 ATTGAGGCGCTTAATCTGATCGGTGTCCGGTCAACCCTGTCAGGAATCAG    737
                     .||||||||||.||..|||||||.||...|||.||..|.||.||||||||
RBAM_013060__    688 GTTGAGGCGCTGAAATTGATCGGCGTTACGTCCACTTTATCCGGAATCAG    737

BSNT_02222___    738 GCCTGAAATTGCGCAAACTGCTGTACAGCTGGGGATTGATTTTTCGAATA    787
                     |||.|||||.||.|||||.||.||||||||.||.|||.||||.||..|||
RBAM_013060__    738 GCCGGAAATCGCTCAAACCGCCGTACAGCTCGGCATTAATTTCTCAGATA    787

BSNT_02222___    788 TTACCATTAAAACCAACCTTGCCCAAGCATTAAACTATCATCAATAA    834
                     ||||.||.||..||||.||.||.||.||..|.||.||||||||||||
RBAM_013060__    788 TTACGATCAAGTCCAATCTCGCTCAGGCTCTCAATTATCATCAATAA    834


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02222 and RBAM_013060

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
