Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_02200 and RBAM_012890
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence pep-align/BSNT_02200___ykkB.1.9828.seq
# -bsequence pep-align/RBAM_012890___ykkB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_02200___ykkB-RBAM_012890___ykkB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02200___ykkB-RBAM_012890___ykkB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02200___ykkB
# 2: RBAM_012890___ykkB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 182
# Identity: 103/182 (56.6%)
# Similarity: 125/182 (68.7%)
# Gaps: 11/182 ( 6.0%)
# Score: 544.0
#
#
#=======================================
BSNT_02200___ 1 ----MNAKTKLVTDRIRLRCMEDRDQATLFGLLFNDPDVMTYYSGLKDKR 46
.::.|.|.|.|||||.|.|.|:..|:| ||.|.:||.||..||.:|
RBAM_012890__ 1 MMKHKSSGTILTTGRIRLRTMRDDDEENLYG-LFTDREVMKYYPSLKSRR 49
BSNT_02200___ 47 QTREWVNWNQRNEKGYGVSLWIAEDKRTGEFLGQCGTVPQQIENQTVMEI 96
:|:||:.||:|...||||||||||||.||.||||||.|||.:...|:|||
RBAM_012890__ 50 ETKEWIAWNKRLAAGYGVSLWIAEDKETGAFLGQCGIVPQTVNGNTLMEI 99
BSNT_02200___ 97 GYMFARRHWGNGYAQEAARACLDYGFNERQFGKMAALIDPGNKASIRVAE 146
|||||||.||.|||.|||.|||||||:.:|:|::||||||.|.||:||||
RBAM_012890__ 100 GYMFARRRWGCGYATEAANACLDYGFHTQQYGRIAALIDPENAASVRVAE 149
BSNT_02200___ 147 KIGMHHSETTRKWNKPIAVYERKSYN------ 172
||||...||..||.:.:.|::..|..
RBAM_012890__ 150 KIGMVPGETVTKWERQLTVFDITSDVERFGEM 181
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