Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02200 and RBAM_012890

See Amino acid alignment / Visit BSNT_02200 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence dna-align/BSNT_02200___ykkB.1.9828.seq
#    -bsequence dna-align/RBAM_012890___ykkB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02200___ykkB-RBAM_012890___ykkB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02200___ykkB-RBAM_012890___ykkB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02200___ykkB
# 2: RBAM_012890___ykkB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 581
# Identity:     357/581 (61.4%)
# Similarity:   357/581 (61.4%)
# Gaps:          97/581 (16.7%)
# Score: 1048.0
# 
#
#=======================================

BSNT_02200___      1 ATGAACGCTAAAAC-GAAG-CTTGTG--------------ACCGATCGAA     34
                     ||||    |.|||| .||| |||..|              ||||..||.|
RBAM_012890__      1 ATGA----TGAAACATAAGTCTTCCGGCACCATCCTGACAACCGGGCGTA     46

BSNT_02200___     35 TTCGTTTGCGCTGTATGGAAGATCGGGATCAAGCCACTTTGTTTGGGCTG     84
                     |.|||.||||...||||...|||...|||.|||..|.|||||..||||||
RBAM_012890__     47 TCCGTCTGCGGACTATGCGGGATGACGATGAAGAAAATTTGTACGGGCTG     96

BSNT_02200___     85 CTTTTTAATGATCCTGACGTCATGACATATTAT-----TCCGGTTTAAAA    129
                        ||||..||....||.|||||||.|||||||     ||    ||||||
RBAM_012890__     97 ---TTTACCGACAGAGAGGTCATGAAATATTATCCTTCTC----TTAAAA    139

BSNT_02200___    130 GATAAGA-GGCAAACCCGCGAGTGGGTCAAT----TGGAACCAACGAAAT    174
                     |  .||| ||.||||....||.|||    ||    ||||||.|||||...
RBAM_012890__    140 G--CAGACGGGAAACGAAGGAATGG----ATTGCCTGGAACAAACGATTG    183

BSNT_02200___    175 GAAAAAGGGTACGGCGTTAGTCTGTGGATCGCCGAAGATAAGCGGACAGG    224
                     |....|||.||||||||.|||||.||||||||.||.|||||...|||.||
RBAM_012890__    184 GCCGCAGGATACGGCGTCAGTCTTTGGATCGCAGAGGATAAAGAGACGGG    233

BSNT_02200___    225 GGAGTTTTTGGGGCAATGCGGCACTGTTCCCCAGCAGATCGAAAATC---    271
                     .|..|||.|.||.||||||||.|..|||||   ||||| ||..||.|   
RBAM_012890__    234 CGCATTTCTCGGTCAATGCGGAATCGTTCC---GCAGA-CGGTAAACGGA    279

BSNT_02200___    272 -AAACCGTAATGGAAATTGGCTATATGTTTGCCCGCCGCCACTGGGGGAA    320
                      |.||..|.||||||||.||||||||||||||||||||||.||||||...
RBAM_012890__    280 AACACTTTGATGGAAATCGGCTATATGTTTGCCCGCCGCCGCTGGGGCTG    329

BSNT_02200___    321 CGGCTATGCGCAAGAAGCGGCTCGGGCCTGTCTGGACTATGGCTTT--AA    368
                     ||||||||||..|||.|||||....||.|||||||||||.||.|||  .|
RBAM_012890__    330 CGGCTATGCGACAGAGGCGGCGAACGCTTGTCTGGACTACGGTTTTCATA    379

BSNT_02200___    369 CGAGCGGCAGTTCGGCAAAATG--------GCGGCTTTGATTGATCCGGG    410
                     ||          |.||||.|||        |||||..||||||||||||.
RBAM_012890__    380 CG----------CAGCAATATGGACGCATAGCGGCGCTGATTGATCCGGA    419

BSNT_02200___    411 TAACAAAGCGTCCATACGGGTAGCGGAGAAAATCGGTATGCATCACAGCG    460
                     .|||...||.|||.|.||.||.|||||.||||||||||||...|.|.|.|
RBAM_012890__    420 AAACGCTGCCTCCGTCCGTGTCGCGGAAAAAATCGGTATGGTGCCCGGTG    469

BSNT_02200___    461 AAACGACC---AGAAAATGGAATAAACCGATCGCGGTATATGAAAGAAAA    507
                     |   ||||   |..||||||.|.|..|.|.|..||||.|.|||.|..|.|
RBAM_012890__    470 A---GACCGTTACCAAATGGGAGAGGCAGCTGACGGTTTTTGACATCACA    516

BSNT_02200___    508 TCTTACAATTGA-------------------    519
                     |||.|| .||||                   
RBAM_012890__    517 TCTGAC-GTTGAACGTTTCGGCGAAATGTAG    546


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