Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

Amino acid alignment: BSNT_02188 and RBAM_012830

See DNA alignment / Visit BSNT_02188 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:52
# Commandline: needle
#    -asequence pep-align/BSNT_02188___ykfB.1.9828.seq
#    -bsequence pep-align/RBAM_012830___ykfB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02188___ykfB-RBAM_012830___ykfB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02188___ykfB-RBAM_012830___ykfB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02188___ykfB
# 2: RBAM_012830___ykfB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 365
# Identity:     278/365 (76.2%)
# Similarity:   316/365 (86.6%)
# Gaps:           6/365 ( 1.6%)
# Score: 1448.0
# 
#
#=======================================

BSNT_02188___      1 MKIIRIETSRIAIPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPP     50
                     |:|..|:|.|:::||.|||||||||||.||||||::|:|:|..|||||||
RBAM_012830__      1 MRITDIQTGRMSVPLKKPFKTALRTVYNAESVIVKLTFDNGLTGWGEAPP     50

BSNT_02188___     51 TLVITGDSMDSIESAIHNVLKPALLGKSLAGYEAILHDIQHLLTGNMSAK    100
                     |:||||||.|.||||:|:||||||||:.::|.||:|.||..||..|.|||
RBAM_012830__     51 TVVITGDSADGIESAVHDVLKPALLGRGISGMEAVLFDISRLLERNQSAK    100

BSNT_02188___    101 AAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAEN    150
                     |||:||:|||||||.|.|||::|||||:|||||:|||||||||||.||:.
RBAM_012830__    101 AAVDMAVYDGWAQMHGQPLYRLLGGYRNTLETDFTVSVNSPEEMAGDADR    150

BSNT_02188___    151 YLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKE    200
                     |:.:||..||||||..||:.|:||||.||.|||..|||||||||||.|||
RBAM_012830__    151 YVNKGFHILKIKVGIGDISDDVARIQAIRSRVGGNVKLRLDANQGWTPKE    200

BSNT_02188___    201 AVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTP    250
                     ||||||||||||||||||||||||||:||||:||||.|||||||||||||
RBAM_012830__    201 AVTAIRKMEDAGLGIELVEQPVHKDDIAGLKQVTDAVDTPIMADESVFTP    250

BSNT_02188___    251 RQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIET    300
                     ||||.||||||||||||||||||||..||.||||||.|||||||||||||
RBAM_012830__    251 RQAFHVLQTRSADLINIKLMKAGGIKQAETINAMAETCGVECMVGSMIET    300

BSNT_02188___    301 KLGITAAAHFAASKRNITRFDFDAPLMLKTDVFKGGITYSGSTISMPGKP    350
                     ||||||||||||:|||:||||||||||||.|:.:||||||||.|::|.:|
RBAM_012830__    301 KLGITAAAHFAAAKRNVTRFDFDAPLMLKDDLIQGGITYSGSQIAIPDEP    350

BSNT_02188___    351 GLGITGTAL------    359
                     ||||||.::      
RBAM_012830__    351 GLGITGVSIQEGAKR    365


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.