Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02188 and RBAM_012830
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence dna-align/BSNT_02188___ykfB.1.9828.seq
# -bsequence dna-align/RBAM_012830___ykfB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02188___ykfB-RBAM_012830___ykfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02188___ykfB-RBAM_012830___ykfB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02188___ykfB
# 2: RBAM_012830___ykfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1131
# Identity: 801/1131 (70.8%)
# Similarity: 801/1131 (70.8%)
# Gaps: 84/1131 ( 7.4%)
# Score: 2794.0
#
#
#=======================================
BSNT_02188___ 1 ------ATGA-AAATCATTCGAATCGAAACAAGCCGAATCGCAATTCCGC 43
||.| |.|| |||| ||||..|.||.||..|..|.||||
RBAM_012830__ 1 GTGAGGATTACAGAT-ATTC------AAACGGGACGGATGTCCGTGCCGC 43
BSNT_02188___ 44 TGACAAAGCCGTTTAAAACCGCGCTTCGCACTGTGTATACGGCTGAATCA 93
|||.||||||||||||.|||||..|.|||||.||.||.|..||||||||.
RBAM_012830__ 44 TGAAAAAGCCGTTTAAGACCGCTTTACGCACGGTTTACAATGCTGAATCG 93
BSNT_02188___ 94 GTCATAGTAAGGATTACTTATGACAGCGGTGCAG-TCGGATGGGGAGAAG 142
|||||.||.|.|.|.||||.|||||.|||| |.| .|||.|||||.||.|
RBAM_012830__ 94 GTCATTGTGAAGCTCACTTTTGACAACGGT-CTGACCGGCTGGGGGGAGG 142
BSNT_02188___ 143 CACCCCCGACGTTAGTGATTACAGGAGACAGCATGGATAGCATTGAAAGT 192
|.||.||||||.|.||.||||||||.||||||..|||..|.||||||||.
RBAM_012830__ 143 CGCCGCCGACGGTTGTCATTACAGGCGACAGCGCGGACGGTATTGAAAGC 192
BSNT_02188___ 193 GCCATTCACAATGTTTTAAAACCGGCATTGCTTGGAAAAAGCCTGGCGGG 242
|||.|.|||.||||..|.||.||.|| |..||||| ||||||
RBAM_012830__ 193 GCCGTCCACGATGTGCTGAAGCCCGC-TCTCTTGG---------GGCGGG 232
BSNT_02188___ 243 CTAT----------GAGGCCATTCTGCACGACATCCAGCATCTTCTT--A 280
..|| ||.||..||.||...||.|| ||||....|.|| |
RBAM_012830__ 233 GCATTTCCGGCATGGAAGCTGTTTTGTTTGATAT-CAGCCGGCTGTTGGA 281
BSNT_02188___ 281 CAGGAAATATGAGCGCGAAGGCTGCTGTAGAAATGGCTCTATACGACGGC 330
|.|||||...|||||.||.||.||.||.||.||||||.||||.|||||.
RBAM_012830__ 282 -AAGAAATCAAAGCGCAAAAGCCGCGGTGGATATGGCTGTATATGACGGA 330
BSNT_02188___ 331 TGGGCGCAGATGTGCGGGCTGCCGCTTTATCAAATGCTTGGCGGATATCG 380
||||||||.|||..|||.|.|||||||||.|...|.||.|||||.|||||
RBAM_012830__ 331 TGGGCGCAAATGCACGGACAGCCGCTTTACCGGCTTCTCGGCGGCTATCG 380
BSNT_02188___ 381 AGATACACTGGAAACAGATTATACCGTCAGTGTCAACTCACCTGAAGAGA 430
..||||||||||||||||||.|||||||||.||.|||||.|||||.||||
RBAM_012830__ 381 GAATACACTGGAAACAGATTTTACCGTCAGCGTTAACTCTCCTGAGGAGA 430
BSNT_02188___ 431 TGGCAGCTGATGCCGAGAATTATCTCAAACAAGGCTTTCAAACGCTGAAA 480
||||.|..|||||.||...||||.|.||..||||.|||||.|...|.||.
RBAM_012830__ 431 TGGCGGGGGATGCAGACCGTTATGTGAACAAAGGATTTCATATTTTAAAG 480
BSNT_02188___ 481 ATAAAGGTCGGAAAAGATG--ATATTGCAACAGATATCGCCCGTATCCAG 528
|||||.|||||.|.||.|| ||||.|.| .|||.|.|||||.||.|||
RBAM_012830__ 481 ATAAAAGTCGGCATAGGTGACATATCGGA--CGATGTTGCCCGGATTCAG 528
BSNT_02188___ 529 GAAATCAGAAAACGTGTCGG----ATCAGCTGTGAAACTGCGTTTAGACG 574
|..||||||..||||||||| |.| ||.||||||.|..|.||||
RBAM_012830__ 529 GCGATCAGATCACGTGTCGGCGGAAAC----GTCAAACTGAGACTGGACG 574
BSNT_02188___ 575 CTAATCAGGGGTGGAGGCCGAAGGAAGCGGTAACTGCCATTCGGAAAATG 624
||||.||.||.||||.||||||.|||||.||.||.||.||.||.||.|||
RBAM_012830__ 575 CTAACCAAGGCTGGACGCCGAAAGAAGCCGTGACCGCGATCCGAAAGATG 624
BSNT_02188___ 625 GAGGATGCGGGTCTAGGCATTGAGCTTGTCGAGCAGCCTGTCCATAAAGA 674
||.||.||.||.||.|||||||||||.||||||||||||||.||.|||||
RBAM_012830__ 625 GAAGACGCCGGCCTCGGCATTGAGCTGGTCGAGCAGCCTGTTCACAAAGA 674
BSNT_02188___ 675 CGATCTCGCTGGGCTTAAAAAGGTGACAGATGCAACAGATACGCCGATTA 724
||||.||||.|||||.||..||||.||||||||...|||.||||||||||
RBAM_012830__ 675 CGATATCGCCGGGCTGAAGCAGGTCACAGATGCCGTAGACACGCCGATTA 724
BSNT_02188___ 725 TGGCTGATGAAAGTGTTTTTACACCGCGCCAGGCGTTCGAAGTTCTGCAA 774
||||.|||||.||.||.|||||.||.||.|||||.||..|.||.|||||.
RBAM_012830__ 725 TGGCGGATGAGAGCGTCTTTACCCCCCGTCAGGCCTTTCACGTGCTGCAG 774
BSNT_02188___ 775 ACCCGGAGCGCAGACTTGATCAATATTAAATTGATGAAAGCGGGCGGCAT 824
||..|.|||||.||.||.||.||||||||..|||||||||||||||||||
RBAM_012830__ 775 ACGAGAAGCGCCGATTTAATTAATATTAAGCTGATGAAAGCGGGCGGCAT 824
BSNT_02188___ 825 -CAGCGGAGCAGAGAAAATTAATGCTATGGCGGAGGCCTGCGGGGTGGAG 873
.|||.| ||.||.|.|||.|||||.|||||.||..|.|||||.|||||.
RBAM_012830__ 825 AAAGCAG-GCGGAAACAATCAATGCGATGGCAGAAACGTGCGGCGTGGAA 873
BSNT_02188___ 874 TGTATGGTCGGCAGCATGATCGAAACGAAGCTGGGCATTACGGCCGCGGC 923
||.|||||||||||||||||.||.||.|||||.|||||.||.||||||||
RBAM_012830__ 874 TGCATGGTCGGCAGCATGATTGAGACCAAGCTCGGCATCACCGCCGCGGC 923
BSNT_02188___ 924 GCATTTTGCGGCAAGCAAGAGAAACATCACACGCTTTGATTTTGACGCGC 973
.||||||||.||...|||..|.||..|.|||.|.|||||||||||.||||
RBAM_012830__ 924 TCATTTTGCCGCGGCCAAACGGAATGTGACAAGGTTTGATTTTGATGCGC 973
BSNT_02188___ 974 CGCTGATGCTGAAAACAGATGT-ATTCAAAGGCGGCATAACATATAGCGG 1022
||||.|||||||||...|||.| |||| ||||||||||.|||||.|||||
RBAM_012830__ 974 CGCTTATGCTGAAAGATGATTTGATTC-AAGGCGGCATCACATACAGCGG 1022
BSNT_02188___ 1023 CAGTACGATTTCGATGCCTGGCAAACCGGGCCTCGGAATCACCGGGACTG 1072
||||..||||.||||.||.|.|.|||||||.||||||||.||||| ||
RBAM_012830__ 1023 CAGTCAGATTGCGATTCCCGACGAACCGGGTCTCGGAATTACCGG---TG 1069
BSNT_02188___ 1073 CGCTTTGA----------------------- 1080
.| |.||
RBAM_012830__ 1070 TG--TCGATACAAGAGGGGGCGAAAAGATGA 1098
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