Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_02183 and RBAM_012790

See DNA alignment / Visit BSNT_02183 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:52
# Commandline: needle
#    -asequence pep-align/BSNT_02183___dppC.1.9828.seq
#    -bsequence pep-align/RBAM_012790___dppC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02183___dppC-RBAM_012790___dppC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02183___dppC-RBAM_012790___dppC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02183___dppC
# 2: RBAM_012790___dppC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 320
# Identity:     273/320 (85.3%)
# Similarity:   289/320 (90.3%)
# Gaps:           5/320 ( 1.6%)
# Score: 1405.0
# 
#
#=======================================

BSNT_02183___      1 MNLPVQTDERQPEQHNQVPDEWFVSNQEKNREADSVKRPSLSYTQDAWRR     50
                     ||||.:|     .:|.:|||:||....|:..|.:|||||||||:||||||
RBAM_012790__      1 MNLPQET-----VKHTEVPDDWFQPGAERKGETESVKRPSLSYSQDAWRR     45

BSNT_02183___     51 LKKNKLAMAGLFILLFLFVMTVIGPFLSPHSVVRQSLTEQNLPPSADHWF    100
                     |||||||||||.||..||:..|.||.:|||||.||:|.|||||||..|||
RBAM_012790__     46 LKKNKLAMAGLVILCCLFLSAVFGPLISPHSVTRQTLAEQNLPPSFSHWF     95

BSNT_02183___    101 GTDELGRDVFTRTWYGARISLFVGVMAALIDFLIGVIYGGVAGYKGGRID    150
                     ||||||||||||||||||||||||||||||||||||||||||||||||.|
RBAM_012790__     96 GTDELGRDVFTRTWYGARISLFVGVMAALIDFLIGVIYGGVAGYKGGRTD    145

BSNT_02183___    151 SIMMRIIEVLYGLPYLLVVILLMVLMGPGLGTIIVALTVTGWVGMARIVR    200
                     |.||||||||||||||||||||||||||||.:||||||||||||||||||
RBAM_012790__    146 SAMMRIIEVLYGLPYLLVVILLMVLMGPGLSSIIVALTVTGWVGMARIVR    195

BSNT_02183___    201 GQVLQIKNYEYVLASKTFGAKTFRIIRKNLLPNTMGAIIVQMTLTVPAAI    250
                     ||||::|:.|:|||||||||||||||:|||||||||||||||||||||||
RBAM_012790__    196 GQVLRMKHDEHVLASKTFGAKTFRIIKKNLLPNTMGAIIVQMTLTVPAAI    245

BSNT_02183___    251 FAESFLSFLGLGIQAPFASWGVMANDGLPTILSGHWWRLFFPAFFISLTM    300
                     |||||||||||||||||||||||||||||.||||||||||||||||||||
RBAM_012790__    246 FAESFLSFLGLGIQAPFASWGVMANDGLPAILSGHWWRLFFPAFFISLTM    295

BSNT_02183___    301 YAFNVLGDGLQDALDPKLRR    320
                     ||||||||||||||||||||
RBAM_012790__    296 YAFNVLGDGLQDALDPKLRR    315


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.