Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

Amino acid alignment: BSNT_02178 and RBAM_012740

See DNA alignment / Visit BSNT_02178 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:51
# Commandline: needle
#    -asequence pep-align/BSNT_02178___ykcC.1.9828.seq
#    -bsequence pep-align/RBAM_012740___ykcC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02178___ykcC-RBAM_012740___ykcC.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02178___ykcC-RBAM_012740___ykcC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02178___ykcC
# 2: RBAM_012740___ykcC
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 323
# Identity:     294/323 (91.0%)
# Similarity:   316/323 (97.8%)
# Gaps:           0/323 ( 0.0%)
# Score: 1544.0
# 
#
#=======================================

BSNT_02178___      1 MSRHIQYSIVVPVYNEELVIHETYQRLKEVMDQTKENYELLFVNDGSKDR     50
                     ||||||||||||||||||||..||||||||||||||:|||:|||||||||
RBAM_012740__      1 MSRHIQYSIVVPVYNEELVIQTTYQRLKEVMDQTKEHYELIFVNDGSKDR     50

BSNT_02178___     51 SIEILREHSLIDPRVKIIDFSRNFGHQIAITAGMDYAQGNAIVVIDADLQ    100
                     |||||||||||||||||||||||||||||||||||||:||||.|||||||
RBAM_012740__     51 SIEILREHSLIDPRVKIIDFSRNFGHQIAITAGMDYAEGNAIAVIDADLQ    100

BSNT_02178___    101 DPPELILDMIEKWKEGYEVVYAVRTKRKGETFFKKQTAAMFYRLLSGMTD    150
                     |||||||||||:|||||:||||||||||||||||||||:||||||..:||
RBAM_012740__    101 DPPELILDMIEQWKEGYDVVYAVRTKRKGETFFKKQTASMFYRLLRSVTD    150

BSNT_02178___    151 IDIPIDTGDFRLMDRKVCDEMKRLKEKNPFVRGLVSWVGFKQTAVEYVRD    200
                     ||||:|||||||:||||||||||||||||||||||||||||||||||.||
RBAM_012740__    151 IDIPLDTGDFRLLDRKVCDEMKRLKEKNPFVRGLVSWVGFKQTAVEYERD    200

BSNT_02178___    201 ERLAGETKYPLKKMLKLSMDGITTFSHKPLKLASYAGILMSGAGFLYMFI    250
                     |||||||||||||||||||||||||||||||.|||||::|||||||||||
RBAM_012740__    201 ERLAGETKYPLKKMLKLSMDGITTFSHKPLKAASYAGMIMSGAGFLYMFI    250

BSNT_02178___    251 VLYLKLFTDSTITGWSSLIVIQLLFSGIVLLILGVIGEYIGRIYDEAKDR    300
                     |||:||||:||||||||||||||||||||||:||:|||||||||||||||
RBAM_012740__    251 VLYMKLFTNSTITGWSSLIVIQLLFSGIVLLMLGMIGEYIGRIYDEAKDR    300

BSNT_02178___    301 PLYIVQKSYGIESKRLYRDQHMS    323
                     |||||||:||::::::|||||||
RBAM_012740__    301 PLYIVQKAYGMKNEKIYRDQHMS    323


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.