Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02178 and RBAM_012740
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:51
# Commandline: needle
# -asequence dna-align/BSNT_02178___ykcC.1.9828.seq
# -bsequence dna-align/RBAM_012740___ykcC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02178___ykcC-RBAM_012740___ykcC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02178___ykcC-RBAM_012740___ykcC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02178___ykcC
# 2: RBAM_012740___ykcC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 979
# Identity: 807/979 (82.4%)
# Similarity: 807/979 (82.4%)
# Gaps: 14/979 ( 1.4%)
# Score: 3320.0
#
#
#=======================================
BSNT_02178___ 1 ATGAGCAGACATATTCAATATTCAATTGTTGTACCTGTGTATAATGAAGA 50
||||||||||||||||||||||||||.||.||.||.||.|||||.||.||
RBAM_012740__ 1 ATGAGCAGACATATTCAATATTCAATAGTCGTCCCGGTTTATAACGAGGA 50
BSNT_02178___ 51 GCTTGTCATCCATGA-AACCTATCAGCGCTTAAAAGAGGTCATGGATCAA 99
.||.|||||.|| || |||||||||||||.|.|||||.||||||||||||
RBAM_012740__ 51 ACTCGTCATTCA-GACAACCTATCAGCGCCTGAAAGAAGTCATGGATCAA 99
BSNT_02178___ 100 ACGAAGGAAAACTACGAGCTGCTTTTTGTCAACGATGGCAGCAAAGACCG 149
||.||.||..|.||.||..||.|.||||||||.|||||.|||||||||||
RBAM_012740__ 100 ACAAAAGAGCATTATGAATTGATCTTTGTCAATGATGGAAGCAAAGACCG 149
BSNT_02178___ 150 CAGTATTGAGATTTTAAGAGAGCACAGCCTGATCGATCCGAGAGTGAAAA 199
|||||||||||||||||||||||||||.|||||.||||||||||||||||
RBAM_012740__ 150 CAGTATTGAGATTTTAAGAGAGCACAGTCTGATTGATCCGAGAGTGAAAA 199
BSNT_02178___ 200 TTATTGATTTTTCAAGGAATTTTGGACACCAGATCGCCATTACGGCGGGT 249
|||||||.|||||.||.||.||.|||||.||.|||||.||.||.||||||
RBAM_012740__ 200 TTATTGACTTTTCCAGAAACTTCGGACATCAAATCGCGATCACAGCGGGT 249
BSNT_02178___ 250 ATGGATTATGCACAGGGGAATGCAATCGTCGTCATTGACGCCGATTTGCA 299
||||||||||||.|||||||||||||||.|||||||||||||||||||||
RBAM_012740__ 250 ATGGATTATGCAGAGGGGAATGCAATCGCCGTCATTGACGCCGATTTGCA 299
BSNT_02178___ 300 GGACCCTCCTGAACTGATTTTAGATATGATTGAAAAGTGGAAGGAAGGCT 349
|||||||||||||.|.||..|.|||||||||||..|||||||.|||||||
RBAM_012740__ 300 GGACCCTCCTGAATTAATCCTTGATATGATTGAGCAGTGGAAAGAAGGCT 349
BSNT_02178___ 350 ATGAGGTCGTGTACGCCGTGCGGACTAAACGAAAAGGGGAAACCTTTTTC 399
|.||.||.|||||||||||..|.||.||||||||.||.||||||||||||
RBAM_012740__ 350 ACGATGTGGTGTACGCCGTCAGAACGAAACGAAAGGGAGAAACCTTTTTC 399
BSNT_02178___ 400 AAAAAACAAACCGCGGCTATGTTTTACCGGCTTCT---CAGCGGTATGAC 446
||.|||||.||.||..||||||||||||||||.|| .|||| ||||
RBAM_012740__ 400 AAGAAACAGACGGCCTCTATGTTTTACCGGCTGCTGCGGAGCG---TGAC 446
BSNT_02178___ 447 AGATATTGATATCCCGATTGATACGGGGGATTTTCGCCTCATGGACAGAA 496
.|||||||||||.|||.|.||.||.||.|||||.|||||..|||||||||
RBAM_012740__ 447 TGATATTGATATTCCGCTCGACACCGGAGATTTCCGCCTGCTGGACAGAA 496
BSNT_02178___ 497 AAGTCTGTGATGAAATGAAGAGATTAAAAGAAAAAAATCCATTTGTCAGA 546
|||||||||||||.|||||.||||||||||||||||||||.|||||||||
RBAM_012740__ 497 AAGTCTGTGATGAGATGAAAAGATTAAAAGAAAAAAATCCTTTTGTCAGA 546
BSNT_02178___ 547 GGGCTAGTCAGCTGGGTGGGCTTTAAACAGACAGCGGTCGAGTATGTACG 596
||.||.|||||||||||.||||||||.|||||.||.||.||.||||.|||
RBAM_012740__ 547 GGACTCGTCAGCTGGGTCGGCTTTAAGCAGACTGCTGTAGAATATGAACG 596
BSNT_02178___ 597 TGATGAAAGGCTTGCCGGAGAAACAAAGTACCCGCTCAAGAAAATGCTGA 646
||||||..|||||||.||.|||||.||.||||||||.||.||||||||||
RBAM_012740__ 597 TGATGAGCGGCTTGCGGGGGAAACGAAATACCCGCTTAAAAAAATGCTGA 646
BSNT_02178___ 647 AGCTGTCAATGGACGGCATCACGACATTTTCACATAAACCGCTGAAGCTG 696
||||.||.||||||||.|||||.||.||.||.|||||||||||.|||..|
RBAM_012740__ 647 AGCTTTCCATGGACGGGATCACAACGTTCTCTCATAAACCGCTCAAGGCG 696
BSNT_02178___ 697 GCAAGCTATGCGGGGATTTTAATGTCAGGTGCTGGATTTCTGTATATGTT 746
||||||||||||||.||..|.|||||.||.||.||.|||||.||||||||
RBAM_012740__ 697 GCAAGCTATGCGGGAATGATCATGTCGGGAGCGGGTTTTCTCTATATGTT 746
BSNT_02178___ 747 TATCGTGCTGTATCTGAAGCTATTCACAGACAGCACGATTACCGGCTGGT 796
||||||..|.||..|||||||.||.||..|||||||.|||||.|||||||
RBAM_012740__ 747 TATCGTTTTATACATGAAGCTGTTTACGAACAGCACCATTACGGGCTGGT 796
BSNT_02178___ 797 CATCACTTATTGTGATCCAGCTCCTGTTCAGCGGCATTGTCCTTCTGATT 846
|.||.||.||||||||.|||||..|.|||||||||||.||.||..|.||.
RBAM_012740__ 797 CCTCTCTGATTGTGATACAGCTGTTATTCAGCGGCATCGTTCTATTAATG 846
BSNT_02178___ 847 TTGGGCGTGATCGGCGAATATATCGGCAGAATCTACGATGAAGCCAAAGA 896
.|.||..|||||||||||||||||||.||.||.||.||.|||||.|||||
RBAM_012740__ 847 CTCGGAATGATCGGCGAATATATCGGAAGGATTTATGACGAAGCAAAAGA 896
BSNT_02178___ 897 CAGGCCGCTTTACATCGTCCAAAAATCGTATGGAATTGAAA---GTAAAA 943
|.|.|||||.||.|||||.||||||.||||.||.| ||||| | ||||
RBAM_012740__ 897 CCGTCCGCTCTATATCGTGCAAAAAGCGTACGGCA-TGAAAAACG-AAAA 944
BSNT_02178___ 944 GACTCTATAGAGACCAGCATATGTCATAA 972
|| |.|||.|.||||||||||||||.|||
RBAM_012740__ 945 GA-TTTATCGGGACCAGCATATGTCTTAA 972
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