Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02178 and RBAM_012740

See Amino acid alignment / Visit BSNT_02178 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:51
# Commandline: needle
#    -asequence dna-align/BSNT_02178___ykcC.1.9828.seq
#    -bsequence dna-align/RBAM_012740___ykcC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02178___ykcC-RBAM_012740___ykcC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02178___ykcC-RBAM_012740___ykcC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02178___ykcC
# 2: RBAM_012740___ykcC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 979
# Identity:     807/979 (82.4%)
# Similarity:   807/979 (82.4%)
# Gaps:          14/979 ( 1.4%)
# Score: 3320.0
# 
#
#=======================================

BSNT_02178___      1 ATGAGCAGACATATTCAATATTCAATTGTTGTACCTGTGTATAATGAAGA     50
                     ||||||||||||||||||||||||||.||.||.||.||.|||||.||.||
RBAM_012740__      1 ATGAGCAGACATATTCAATATTCAATAGTCGTCCCGGTTTATAACGAGGA     50

BSNT_02178___     51 GCTTGTCATCCATGA-AACCTATCAGCGCTTAAAAGAGGTCATGGATCAA     99
                     .||.|||||.|| || |||||||||||||.|.|||||.||||||||||||
RBAM_012740__     51 ACTCGTCATTCA-GACAACCTATCAGCGCCTGAAAGAAGTCATGGATCAA     99

BSNT_02178___    100 ACGAAGGAAAACTACGAGCTGCTTTTTGTCAACGATGGCAGCAAAGACCG    149
                     ||.||.||..|.||.||..||.|.||||||||.|||||.|||||||||||
RBAM_012740__    100 ACAAAAGAGCATTATGAATTGATCTTTGTCAATGATGGAAGCAAAGACCG    149

BSNT_02178___    150 CAGTATTGAGATTTTAAGAGAGCACAGCCTGATCGATCCGAGAGTGAAAA    199
                     |||||||||||||||||||||||||||.|||||.||||||||||||||||
RBAM_012740__    150 CAGTATTGAGATTTTAAGAGAGCACAGTCTGATTGATCCGAGAGTGAAAA    199

BSNT_02178___    200 TTATTGATTTTTCAAGGAATTTTGGACACCAGATCGCCATTACGGCGGGT    249
                     |||||||.|||||.||.||.||.|||||.||.|||||.||.||.||||||
RBAM_012740__    200 TTATTGACTTTTCCAGAAACTTCGGACATCAAATCGCGATCACAGCGGGT    249

BSNT_02178___    250 ATGGATTATGCACAGGGGAATGCAATCGTCGTCATTGACGCCGATTTGCA    299
                     ||||||||||||.|||||||||||||||.|||||||||||||||||||||
RBAM_012740__    250 ATGGATTATGCAGAGGGGAATGCAATCGCCGTCATTGACGCCGATTTGCA    299

BSNT_02178___    300 GGACCCTCCTGAACTGATTTTAGATATGATTGAAAAGTGGAAGGAAGGCT    349
                     |||||||||||||.|.||..|.|||||||||||..|||||||.|||||||
RBAM_012740__    300 GGACCCTCCTGAATTAATCCTTGATATGATTGAGCAGTGGAAAGAAGGCT    349

BSNT_02178___    350 ATGAGGTCGTGTACGCCGTGCGGACTAAACGAAAAGGGGAAACCTTTTTC    399
                     |.||.||.|||||||||||..|.||.||||||||.||.||||||||||||
RBAM_012740__    350 ACGATGTGGTGTACGCCGTCAGAACGAAACGAAAGGGAGAAACCTTTTTC    399

BSNT_02178___    400 AAAAAACAAACCGCGGCTATGTTTTACCGGCTTCT---CAGCGGTATGAC    446
                     ||.|||||.||.||..||||||||||||||||.||   .||||   ||||
RBAM_012740__    400 AAGAAACAGACGGCCTCTATGTTTTACCGGCTGCTGCGGAGCG---TGAC    446

BSNT_02178___    447 AGATATTGATATCCCGATTGATACGGGGGATTTTCGCCTCATGGACAGAA    496
                     .|||||||||||.|||.|.||.||.||.|||||.|||||..|||||||||
RBAM_012740__    447 TGATATTGATATTCCGCTCGACACCGGAGATTTCCGCCTGCTGGACAGAA    496

BSNT_02178___    497 AAGTCTGTGATGAAATGAAGAGATTAAAAGAAAAAAATCCATTTGTCAGA    546
                     |||||||||||||.|||||.||||||||||||||||||||.|||||||||
RBAM_012740__    497 AAGTCTGTGATGAGATGAAAAGATTAAAAGAAAAAAATCCTTTTGTCAGA    546

BSNT_02178___    547 GGGCTAGTCAGCTGGGTGGGCTTTAAACAGACAGCGGTCGAGTATGTACG    596
                     ||.||.|||||||||||.||||||||.|||||.||.||.||.||||.|||
RBAM_012740__    547 GGACTCGTCAGCTGGGTCGGCTTTAAGCAGACTGCTGTAGAATATGAACG    596

BSNT_02178___    597 TGATGAAAGGCTTGCCGGAGAAACAAAGTACCCGCTCAAGAAAATGCTGA    646
                     ||||||..|||||||.||.|||||.||.||||||||.||.||||||||||
RBAM_012740__    597 TGATGAGCGGCTTGCGGGGGAAACGAAATACCCGCTTAAAAAAATGCTGA    646

BSNT_02178___    647 AGCTGTCAATGGACGGCATCACGACATTTTCACATAAACCGCTGAAGCTG    696
                     ||||.||.||||||||.|||||.||.||.||.|||||||||||.|||..|
RBAM_012740__    647 AGCTTTCCATGGACGGGATCACAACGTTCTCTCATAAACCGCTCAAGGCG    696

BSNT_02178___    697 GCAAGCTATGCGGGGATTTTAATGTCAGGTGCTGGATTTCTGTATATGTT    746
                     ||||||||||||||.||..|.|||||.||.||.||.|||||.||||||||
RBAM_012740__    697 GCAAGCTATGCGGGAATGATCATGTCGGGAGCGGGTTTTCTCTATATGTT    746

BSNT_02178___    747 TATCGTGCTGTATCTGAAGCTATTCACAGACAGCACGATTACCGGCTGGT    796
                     ||||||..|.||..|||||||.||.||..|||||||.|||||.|||||||
RBAM_012740__    747 TATCGTTTTATACATGAAGCTGTTTACGAACAGCACCATTACGGGCTGGT    796

BSNT_02178___    797 CATCACTTATTGTGATCCAGCTCCTGTTCAGCGGCATTGTCCTTCTGATT    846
                     |.||.||.||||||||.|||||..|.|||||||||||.||.||..|.||.
RBAM_012740__    797 CCTCTCTGATTGTGATACAGCTGTTATTCAGCGGCATCGTTCTATTAATG    846

BSNT_02178___    847 TTGGGCGTGATCGGCGAATATATCGGCAGAATCTACGATGAAGCCAAAGA    896
                     .|.||..|||||||||||||||||||.||.||.||.||.|||||.|||||
RBAM_012740__    847 CTCGGAATGATCGGCGAATATATCGGAAGGATTTATGACGAAGCAAAAGA    896

BSNT_02178___    897 CAGGCCGCTTTACATCGTCCAAAAATCGTATGGAATTGAAA---GTAAAA    943
                     |.|.|||||.||.|||||.||||||.||||.||.| |||||   | ||||
RBAM_012740__    897 CCGTCCGCTCTATATCGTGCAAAAAGCGTACGGCA-TGAAAAACG-AAAA    944

BSNT_02178___    944 GACTCTATAGAGACCAGCATATGTCATAA    972
                     || |.|||.|.||||||||||||||.|||
RBAM_012740__    945 GA-TTTATCGGGACCAGCATATGTCTTAA    972


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