Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02123 and RBAM_012560

See DNA alignment / Visit BSNT_02123 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:50
# Commandline: needle
#    -asequence pep-align/BSNT_02123___xkdD.1.9828.seq
#    -bsequence pep-align/RBAM_012560___xkdD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02123___xkdD-RBAM_012560___xkdD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02123___xkdD-RBAM_012560___xkdD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02123___xkdD
# 2: RBAM_012560___xkdD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 126
# Identity:      65/126 (51.6%)
# Similarity:    75/126 (59.5%)
# Gaps:          23/126 (18.3%)
# Score: 297.5
# 
#
#=======================================

BSNT_02123___      1 MKVLAKTKQAEKSPAPWRAVPCGDTKPIYIYSAYSEEEKERFPYSNGRLI     50
                            .|.:.||||||||..|..|||||||||||.:||:|||||||||
RBAM_012560__      1 -------MQEKHSPAPWRAVHSGKEKPIYIYSAYSEADKEKFPYSNGRLI     43

BSNT_02123___     51 AAVFDLSSYSQKSNAALMAAAPELLEASKAALDFLKGNSVHSKERII---     97
                     ||||:||||||:.||||||.||||.||::.||..|:|.|...||..|   
RBAM_012560__     44 AAVFNLSSYSQQINAALMAKAPELFEAAETALRLLRGESSEEKEAFINEL     93

BSNT_02123___     98 -------LLLEKAEASAAPKRGGKET    116
                            .:|:|.|......      
RBAM_012560__     94 GSLIHEVNILKKTEDVKHES------    113


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