Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02123 and RBAM_012560
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:50
# Commandline: needle
# -asequence dna-align/BSNT_02123___xkdD.1.9828.seq
# -bsequence dna-align/RBAM_012560___xkdD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02123___xkdD-RBAM_012560___xkdD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02123___xkdD-RBAM_012560___xkdD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02123___xkdD
# 2: RBAM_012560___xkdD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 397
# Identity: 227/397 (57.2%)
# Similarity: 227/397 (57.2%)
# Gaps: 101/397 (25.4%)
# Score: 627.0
#
#
#=======================================
BSNT_02123___ 1 GTGAAAGTGTTGGCAAAGACAAAACAGGCAGAGAAAAGCCCTGCGCCGTG 50
|.|| |||| ||||| |.|||||.||.||.||
RBAM_012560__ 1 ----------TTGC-AAGA-AAAAC---------ACAGCCCCGCTCCATG 29
BSNT_02123___ 51 GCGTGCTGT-CCCATGCGGGGATACG--AAACCGATCTATATTTATTCAG 97
|||.||.|| |.|| |.|||.|.| |||||.||.||.||||||||.|
RBAM_012560__ 30 GCGGGCCGTACACA---GCGGAAAAGAAAAACCCATTTACATTTATTCCG 76
BSNT_02123___ 98 CTTACAGTGAAGAAGAAAAAGA-AAGATTCCCATATTCAAACGGACGGCT 146
|||||||.||||..||.||||| ||| |||||.||||||||||||.||||
RBAM_012560__ 77 CTTACAGCGAAGCGGATAAAGAGAAG-TTCCCTTATTCAAACGGAAGGCT 125
BSNT_02123___ 147 GATTGCCGCTGTATTTGACCTT-AGCTCTTATTCGCAAAAAAGCAATGCC 195
.||.||.||.|| |||.|.||| ||.||.||.||.||..|.|.|||.||.
RBAM_012560__ 126 CATCGCGGCCGT-TTTCAACTTAAGTTCATACTCTCAGCAGATCAACGCG 174
BSNT_02123___ 196 GCTTTGATGGCCGCTGCGCCTGAATTGCTGGAAGCGTCTAAAGCAGCACT 245
||.||||||||....||.||.|||.|..|.||.|||.|..||.|.||.||
RBAM_012560__ 175 GCATTGATGGCAAAAGCCCCGGAACTTTTTGAGGCGGCCGAAACGGCTCT 224
BSNT_02123___ 246 -----TGATTTTCT-------GAAAGGGAATTCT--------------GT 269
|| || ||||| |||| ||
RBAM_012560__ 225 CCGCCTG-----CTCCGGGGAGAAAG----TTCTGAAGAAAAAGAAGCGT 265
BSNT_02123___ 270 TCATTCAAAGGAGC------GCATCATTCTGCTATTAGAAAAAGCTGAAG 313
|||| |||.|||| ||.|||| |..|||||
RBAM_012560__ 266 TCAT--AAATGAGCTCGGAAGCCTCAT---------------ACATGAAG 298
BSNT_02123___ 314 CAAGC--GCTGCACCGAAAAGGGGAGGAAAAGAAACATGA------- 351
.||.| .|||.| ||||..||||||....||||||||
RBAM_012560__ 299 TAAACATCCTGAA---AAAAACGGAGGACGTAAAACATGAATCCTAA 342
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