Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02118 and RBAM_012530

See DNA alignment / Visit BSNT_02118 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:50
# Commandline: needle
#    -asequence pep-align/BSNT_02118___xkdB.1.9828.seq
#    -bsequence pep-align/RBAM_012530___xkdB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02118___xkdB-RBAM_012530___xkdB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02118___xkdB-RBAM_012530___xkdB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02118___xkdB
# 2: RBAM_012530___xkdB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 278
# Identity:     127/278 (45.7%)
# Similarity:   158/278 (56.8%)
# Gaps:          64/278 (23.0%)
# Score: 627.0
# 
#
#=======================================

BSNT_02118___      1 MKNDKSYPFPTYSGLLNSEHYDKMGPALWLFLWFISSTTKEIEKDGVSWG     50
                                                                       
RBAM_012530__      0 --------------------------------------------------      0

BSNT_02118___     51 IVLGHKPLKAREMAAVFGVSEKTVRRWLELLENHDYIKAVRAPYGLMISV    100
                                 ||.||.|||||||||||:||.|:|||.|||||||::||
RBAM_012530__      1 ------------MADVFAVSEKTVRRWLEVLEQHEYIKTVRAPYGLIVSV     38

BSNT_02118___    101 KHSKKFSFRSDNTVHGSLKERPFSPQTPDTNDRTDIDKTNKYTAADDAVD    150
                     ||||:|:.:...| .....:|..|....|.|.|.:||.|..:| |::|::
RBAM_012530__     39 KHSKRFTPKKTLT-RPEATDRTISADHRDKNVRREIDITINHT-AEEAIN     86

BSNT_02118___    151 HIAKRFTQLRSAQEGRTVYPSSRDYQAIARIVAIGVPVMQTIKWLEECFQ    200
                     .||..|.:||||||||:||||.||||||||||::|....:.||||.|||.
RBAM_012530__     87 DIAAHFIRLRSAQEGRSVYPSPRDYQAIARIVSLGASAQEAIKWLGECFT    136

BSNT_02118___    201 TFENRRTAASETIKAFRYCSKFIEDRFFAQQAKKNAAIQHERMKKHDKTN    250
                     .||.|||:::||||||.||:|::|||..|:.|.:....:.||...|||||
RBAM_012530__    137 AFEQRRTSSAETIKAFSYCAKYMEDRLNARIAGRTITTKKERNTIHDKTN    186

BSNT_02118___    251 NRTDFGRAEKRETSITGGQTGRIRRKQV    278
                     :|.|.||.|||:||||||||||||||.:
RBAM_012530__    187 DRADTGRPEKRKTSITGGQTGRIRRKPL    214


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