Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02118 and RBAM_012530

See Amino acid alignment / Visit BSNT_02118 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:50
# Commandline: needle
#    -asequence dna-align/BSNT_02118___xkdB.1.9828.seq
#    -bsequence dna-align/RBAM_012530___xkdB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02118___xkdB-RBAM_012530___xkdB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02118___xkdB-RBAM_012530___xkdB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02118___xkdB
# 2: RBAM_012530___xkdB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 875
# Identity:     470/875 (53.7%)
# Similarity:   470/875 (53.7%)
# Gaps:         268/875 (30.6%)
# Score: 1504.5
# 
#
#=======================================

BSNT_02118___      1 ATGAAAAACGATAAAAGCTATCCTTTTCCGACGTATTCAGGGTTATTGAA     50
                                                                       
RBAM_012530__      0 --------------------------------------------------      0

BSNT_02118___     51 TTCAGAACATTATGACAAAATGGGCCCGGCGCTATGGTTGTTTCTCTGGT    100
                                                                       
RBAM_012530__      0 --------------------------------------------------      0

BSNT_02118___    101 TTATCAGCTCAACAACAAAAGAAATCGAAAAAGACGGGGTAAGCTGGGGC    150
                                                                       
RBAM_012530__      0 --------------------------------------------------      0

BSNT_02118___    151 ATCGTACTCGGCCATAAGCCGTTAAAAGCGAGAGAAATGGCGGCAGTCTT    200
                                                         |||||.|..||.||
RBAM_012530__      1 ------------------------------------ATGGCCGATGTATT     14

BSNT_02118___    201 CGGCGTAAGTGAAAAAACCGTCAGAAGATGGCTGGAGCTTCTCGAAAACC    250
                     .|.|||.||.|||||||||||||||.|.|||||.|||.||.|.|||.|.|
RBAM_012530__     15 TGCCGTCAGCGAAAAAACCGTCAGACGGTGGCTTGAGGTTTTGGAACAGC     64

BSNT_02118___    251 ATGATTACATAAAGGCCGTCCGTGCGCCATACGGACTGATGATTTCGGTC    300
                     ||||.||.||.||..|||||||.||.||.||||||||.||..|.||.||.
RBAM_012530__     65 ATGAATATATCAAAACCGTCCGCGCCCCTTACGGACTCATCGTCTCCGTA    114

BSNT_02118___    301 AAGCATTCCAAAAAATTCA-GCTTCAGATCGGACAATAC--TGTACACG-    346
                     |||||.||.||||.||||| ||       ||.|.||.||  || ||.|| 
RBAM_012530__    115 AAGCACTCGAAAAGATTCACGC-------CGAAAAAGACATTG-ACCCGC    156

BSNT_02118___    347 --GGAGTCTAAAAGAACGGCCATTTTCGCCGCAGA-CACC-GGACACAAA    392
                       |||..| ||..||.|||.||.|.|||  ||.|| |||| |||||.|||
RBAM_012530__    157 CCGGAAGC-AACTGACCGGACAATATCG--GCGGATCACCGGGACAAAAA    203

BSNT_02118___    393 CGACCGTACAGATATAGATAAAACAAACAAAT-ATACTGCTGCTGATGAT    441
                     .|.|||.|.|||.|||||||.||| ||.|||| |||   |||||||.||.
RBAM_012530__    204 TGTCCGGAGAGAAATAGATATAAC-AATAAATCATA---CTGCTGAAGAA    249

BSNT_02118___    442 GCAGTGGAT----CACATTGCGAAGCG----GTTTA-CACAATTACGGTC    482
                     ||    |||    .|||||||    ||    .|||| || .||||.||||
RBAM_012530__    250 GC----GATTAACGACATTGC----CGCCCATTTTATCA-GATTAAGGTC    290

BSNT_02118___    483 GGCTCAAGAAGGACGCACCGTGTATCCTTCCTCAAGAGATTATCAAGCCA    532
                     .||.||.||.||.||.|.|||.||.||.||..|..|.||||||||.||||
RBAM_012530__    291 TGCACAGGAGGGGCGGAGCGTATACCCGTCGCCCCGGGATTATCAGGCCA    340

BSNT_02118___    533 TCGCCCGCATTGTTGCCATCGGCGTTCCTGTCATGC-----AAACAATCA    577
                     |||||||.||||||.||.||||.|    .|||| ||     ||.||||||
RBAM_012530__    341 TCGCCCGTATTGTTTCCCTCGGTG----CGTCA-GCACAAGAAGCAATCA    385

BSNT_02118___    578 AATGGCTTGAAGAATGCTTT-CAGACTTTTGAAAACCGGCGGACCGCCGC    626
                     |||||||.|..||||||||| |.| ||||||||.|.|||||.||..|..|
RBAM_012530__    386 AATGGCTCGGCGAATGCTTTACCG-CTTTTGAACAGCGGCGCACATCTTC    434

BSNT_02118___    627 TTCTGAAACAATCAAGGCTTTTCGCTACTGCTCGAAATTCATTGAAGACA    676
                     ..|||||||.|||||||||||..||||.|||.|.||.|..||.||||||.
RBAM_012530__    435 AGCTGAAACGATCAAGGCTTTCAGCTATTGCGCCAAGTATATGGAAGACC    484

BSNT_02118___    677 GATT-----------TTTCGCGCAG--CAAGC-CAAAAAGAATGCCGCAA    712
                     |.||           ||.||.|.||  |||.| |||.||.||        
RBAM_012530__    485 GCTTGAATGCACGAATTGCGGGAAGGACAATCACAACAAAAA--------    526

BSNT_02118___    713 TTCAGCATGAGAGGATGAAAAAACATGACAAAACGAACAATCGAACAGAT    762
                           |.|||||||..|..|.||||||||||||||||.|||||.|||||
RBAM_012530__    527 ------AAGAGAGGAATACGATACATGACAAAACGAACGATCGAGCAGAT    570

BSNT_02118___    763 TTTGGACGAGCTGAGAAGAGGGAGACGTCCATTACTGGCGGACAAACCGG    812
                     ..|||.|||.||||.||..||.|.||||||||||||||||||||.|||||
RBAM_012530__    571 ACTGGCCGACCTGAAAAACGGAAAACGTCCATTACTGGCGGACAGACCGG    620

BSNT_02118___    813 CCGAATCAGACGCAAGCAGGTATGA    837
                     ..||||||||||.||||.|.|.|||
RBAM_012530__    621 AAGAATCAGACGAAAGCCGCTTTGA    645


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