Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02118 and RBAM_012530
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:50
# Commandline: needle
# -asequence dna-align/BSNT_02118___xkdB.1.9828.seq
# -bsequence dna-align/RBAM_012530___xkdB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02118___xkdB-RBAM_012530___xkdB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02118___xkdB-RBAM_012530___xkdB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02118___xkdB
# 2: RBAM_012530___xkdB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 875
# Identity: 470/875 (53.7%)
# Similarity: 470/875 (53.7%)
# Gaps: 268/875 (30.6%)
# Score: 1504.5
#
#
#=======================================
BSNT_02118___ 1 ATGAAAAACGATAAAAGCTATCCTTTTCCGACGTATTCAGGGTTATTGAA 50
RBAM_012530__ 0 -------------------------------------------------- 0
BSNT_02118___ 51 TTCAGAACATTATGACAAAATGGGCCCGGCGCTATGGTTGTTTCTCTGGT 100
RBAM_012530__ 0 -------------------------------------------------- 0
BSNT_02118___ 101 TTATCAGCTCAACAACAAAAGAAATCGAAAAAGACGGGGTAAGCTGGGGC 150
RBAM_012530__ 0 -------------------------------------------------- 0
BSNT_02118___ 151 ATCGTACTCGGCCATAAGCCGTTAAAAGCGAGAGAAATGGCGGCAGTCTT 200
|||||.|..||.||
RBAM_012530__ 1 ------------------------------------ATGGCCGATGTATT 14
BSNT_02118___ 201 CGGCGTAAGTGAAAAAACCGTCAGAAGATGGCTGGAGCTTCTCGAAAACC 250
.|.|||.||.|||||||||||||||.|.|||||.|||.||.|.|||.|.|
RBAM_012530__ 15 TGCCGTCAGCGAAAAAACCGTCAGACGGTGGCTTGAGGTTTTGGAACAGC 64
BSNT_02118___ 251 ATGATTACATAAAGGCCGTCCGTGCGCCATACGGACTGATGATTTCGGTC 300
||||.||.||.||..|||||||.||.||.||||||||.||..|.||.||.
RBAM_012530__ 65 ATGAATATATCAAAACCGTCCGCGCCCCTTACGGACTCATCGTCTCCGTA 114
BSNT_02118___ 301 AAGCATTCCAAAAAATTCA-GCTTCAGATCGGACAATAC--TGTACACG- 346
|||||.||.||||.||||| || ||.|.||.|| || ||.||
RBAM_012530__ 115 AAGCACTCGAAAAGATTCACGC-------CGAAAAAGACATTG-ACCCGC 156
BSNT_02118___ 347 --GGAGTCTAAAAGAACGGCCATTTTCGCCGCAGA-CACC-GGACACAAA 392
|||..| ||..||.|||.||.|.||| ||.|| |||| |||||.|||
RBAM_012530__ 157 CCGGAAGC-AACTGACCGGACAATATCG--GCGGATCACCGGGACAAAAA 203
BSNT_02118___ 393 CGACCGTACAGATATAGATAAAACAAACAAAT-ATACTGCTGCTGATGAT 441
.|.|||.|.|||.|||||||.||| ||.|||| ||| |||||||.||.
RBAM_012530__ 204 TGTCCGGAGAGAAATAGATATAAC-AATAAATCATA---CTGCTGAAGAA 249
BSNT_02118___ 442 GCAGTGGAT----CACATTGCGAAGCG----GTTTA-CACAATTACGGTC 482
|| ||| .||||||| || .|||| || .||||.||||
RBAM_012530__ 250 GC----GATTAACGACATTGC----CGCCCATTTTATCA-GATTAAGGTC 290
BSNT_02118___ 483 GGCTCAAGAAGGACGCACCGTGTATCCTTCCTCAAGAGATTATCAAGCCA 532
.||.||.||.||.||.|.|||.||.||.||..|..|.||||||||.||||
RBAM_012530__ 291 TGCACAGGAGGGGCGGAGCGTATACCCGTCGCCCCGGGATTATCAGGCCA 340
BSNT_02118___ 533 TCGCCCGCATTGTTGCCATCGGCGTTCCTGTCATGC-----AAACAATCA 577
|||||||.||||||.||.||||.| .|||| || ||.||||||
RBAM_012530__ 341 TCGCCCGTATTGTTTCCCTCGGTG----CGTCA-GCACAAGAAGCAATCA 385
BSNT_02118___ 578 AATGGCTTGAAGAATGCTTT-CAGACTTTTGAAAACCGGCGGACCGCCGC 626
|||||||.|..||||||||| |.| ||||||||.|.|||||.||..|..|
RBAM_012530__ 386 AATGGCTCGGCGAATGCTTTACCG-CTTTTGAACAGCGGCGCACATCTTC 434
BSNT_02118___ 627 TTCTGAAACAATCAAGGCTTTTCGCTACTGCTCGAAATTCATTGAAGACA 676
..|||||||.|||||||||||..||||.|||.|.||.|..||.||||||.
RBAM_012530__ 435 AGCTGAAACGATCAAGGCTTTCAGCTATTGCGCCAAGTATATGGAAGACC 484
BSNT_02118___ 677 GATT-----------TTTCGCGCAG--CAAGC-CAAAAAGAATGCCGCAA 712
|.|| ||.||.|.|| |||.| |||.||.||
RBAM_012530__ 485 GCTTGAATGCACGAATTGCGGGAAGGACAATCACAACAAAAA-------- 526
BSNT_02118___ 713 TTCAGCATGAGAGGATGAAAAAACATGACAAAACGAACAATCGAACAGAT 762
|.|||||||..|..|.||||||||||||||||.|||||.|||||
RBAM_012530__ 527 ------AAGAGAGGAATACGATACATGACAAAACGAACGATCGAGCAGAT 570
BSNT_02118___ 763 TTTGGACGAGCTGAGAAGAGGGAGACGTCCATTACTGGCGGACAAACCGG 812
..|||.|||.||||.||..||.|.||||||||||||||||||||.|||||
RBAM_012530__ 571 ACTGGCCGACCTGAAAAACGGAAAACGTCCATTACTGGCGGACAGACCGG 620
BSNT_02118___ 813 CCGAATCAGACGCAAGCAGGTATGA 837
..||||||||||.||||.|.|.|||
RBAM_012530__ 621 AAGAATCAGACGAAAGCCGCTTTGA 645
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