Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02078 and RBAM_012330

See DNA alignment / Visit BSNT_02078 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:47
# Commandline: needle
#    -asequence pep-align/BSNT_02078___yjkB.1.9828.seq
#    -bsequence pep-align/RBAM_012330___yjkB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02078___yjkB-RBAM_012330___yjkB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02078___yjkB-RBAM_012330___yjkB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02078___yjkB
# 2: RBAM_012330___yjkB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 250
# Identity:     152/250 (60.8%)
# Similarity:   199/250 (79.6%)
# Gaps:           1/250 ( 0.4%)
# Score: 800.0
# 
#
#=======================================

BSNT_02078___      1 MEANDQTQNIPAISFRSVRKSYKQDGQTYDVLQDVTGDIQQGAIVAVLGP     50
                      .::...:.||||||.|..|.::|:..::|||..|||.||:|:|.|::||
RBAM_012330__      1 -MSSCMKEEIPAISFLSAGKRFEQNNASFDVLSRVTGHIQKGSITALIGP     49

BSNT_02078___     51 SGSGKSTLLSMCNLMRTPDSGEVNIYGKEVREWNVNELRRTAALAFQSAP    100
                     ||:|||||||:||||.|||.|||.::|||:|.|::.|||:||.|||||||
RBAM_012330__     50 SGAGKSTLLSLCNLMNTPDEGEVLVFGKEIRHWDIRELRKTAGLAFQSAP     99

BSNT_02078___    101 VLDGTVRDNLSLVQRLHQSQLYSPEKLASLAGLPPELLDRSARDLSGGQR    150
                     ||:|||||||.|.::||.:|.|:||:||....||..||||:|::||||||
RBAM_012330__    100 VLEGTVRDNLLLAEKLHGAQHYTPEELADFTDLPRVLLDRNAKELSGGQR    149

BSNT_02078___    151 QRLSLARTLSNPSSILLLDEITSALDPVSALEIEELIKRQHQEKKWTVMW    200
                     |:|||||||:...||||||||||||||.|.|.||:||.:.|::|:.||:|
RBAM_012330__    150 QKLSLARTLAGLPSILLLDEITSALDPSSVLIIEKLITKLHRQKQLTVLW    199

BSNT_02078___    201 VTHNMEQAKRIADTIWFMADGRLLEIAETDTFFSAPQHEAAKEFLKGGTR    250
                     :|||:|||:|::||:||||:|||||.|||.|||..|:||.|:..|:|...
RBAM_012330__    200 ITHNLEQAERLSDTVWFMAEGRLLETAETKTFFKEPKHEKARALLQGSGC    249


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